Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01523 ATGATAACGGCCTCTCCTTATAGATTGGTTTCTTTTCCAAAAATTGTTGGGAAAATTGACATGGATTATTTGATCGATGTTGTGGCAATTGTATCATCTGTTGGACGTGAGAGGGTTTATGAAAGGAACCGTGTTACTACTAGGTTTAAGGTGATTGAGTTAGAAGCCAATGGAATGAAACTTGACTGCACGCTTTTTGGAACTTATGTTGATGCCCTTGATGCGTTCCTCCAAACTGGATACACTGGAAAAGTTGTTGTGCTAGCTGAATATCTAAAGGTTAAGATGTATAATGGGAAAGTCCAATTGCAGAATGCAATGAACTGTACGAATCTAATGTTCAACCCAGAAATCCCTGAGGCAAATACTTTAAAACTCAGTGATAACATTGGATCTCCTACTCAACCATTCAGTTATATGAAGGATGCTTCTGAGTTGAGTTTAGAAGAAGAATTCTTGAATTTGAGTCAACGAAAAACAATTGAGGAGTTAAAAGACATTCAAAATGACATGGTTTGTGTAGTTCTAGGCACAATCAACCATGTTGTTGGTGGCAATGACTGGTGGTATGCCGCATGTGTCTGCAACAAGGGAGTTATTGCAGATTCGAAAAGATTTTTTTGCCCTAAATGTAACAAGCATATTTGGACTATTGTGCCAAGGTATCGTATCAGACTGAGAGTTATTGATGAAACTGATTCTGCAACTTTTGTGCTTTTTGACCGTGACTGTTATTCGCTGACAAGGAAAACATGTCTTGATTTGATCGAATAG 774 0.3798 MITASPYRLVSFPKIVGKIDMDYLIDVVAIVSSVGRERVYERNRVTTRFKVIELEANGMKLDCTLFGTYVDALDAFLQTGYTGKVVVLAEYLKVKMYNGKVQLQNAMNCTNLMFNPEIPEANTLKLSDNIGSPTQPFSYMKDASELSLEEEFLNLSQRKTIEELKDIQNDMVCVVLGTINHVVGGNDWWYAACVCNKGVIADSKRFFCPKCNKHIWTIVPRYRIRLRVIDETDSATFVLFDRDCYSLTRKTCLDLIE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01523 257 CDD RPA1_DBD_C 161 257 IPR047192 -
Vivi4g01523 257 Pfam Replication factor-A C terminal domain 177 244 IPR013955 -
Vivi4g01523 257 CDD RPA1_DBD_B_like 26 127 - -
Vivi4g01523 257 Gene3D - 2 131 IPR012340 -
Vivi4g01523 257 SUPERFAMILY Nucleic acid-binding proteins 7 125 IPR012340 -
Vivi4g01523 257 Gene3D - 145 257 IPR012340 -
Vivi4g01523 257 SUPERFAMILY Nucleic acid-binding proteins 157 256 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01523 Vivi-Chr4 58988513 58989775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01523 6 232 Core DNA Replication Machinery Family AT2G06510 24.797 1.12e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01523 - - vvo:131597257 513.072