Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01479 ATGCACTTCAGGGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGCAAGAGGATGTATGGGAATTTGATCTGTAGGGTGAAGCTTCTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGACCCTTTGTGATGAACAGCTTGGAGCTTTTGAAGCTTTAAGGGTTGCTTTGGATTTGGCTATGATCCTTCTAAAGTTTGTTAACCAAGGAAGTAAGCTTTATCCGGCTTTACAGAGGAATAATGCAGCGGATAAGTTCCAACAAGTAACTGAAAAAATTGAAGCTGCACTGAGTGATATTTCGTACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATAGAATTGGTGCATGCTCAGTTCAAAAGAGCCAAAGCTCAAACGAAATTTGCTGATTTACAACTAGATTTGGATATGGCTGTAGCACTGAAAGAAAAAGACCATGATCCTGCTATACTCAAAAGGCTTTCCGAGAAGCTGCATTTGAGGGCTATAAATGATTTAAAGAAAGAGTCTAGTAAATTACACGAATTGGTCATAGCAAGCAATGGAGAATTAGCGGACAGCTTTGAAACAGTCTCGTCTCTTCTTAGGAAACTGAAGGACTGGGTGCTCACTGAAAATCCGGAGATTGATAATGCATATGAGAACGAGAAAGTGTCAGTTAAGCATCGGTCTCCTGTAATCCCAGATGATTTTCGATGTCCTATATCGCTTGAACTAATGAAAGATCCTGTAATTGTATCTATCGGTCAGACATATGAAAGATCGTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACTTGCCCTAAAACACAGCAAACACTTCTGCATACCGCCCTTACTCCTAACTATGTTTTGAATAGTCTGATTGGTTTATGGTGTGAAAGCAATGGCATTGAGCTACCAAAGAAGCAAGGTAGCTGTAAAACAACGAAATCCGGAACCAGTCTTTCAGATTGTGACAGAATTGCTATCAAAGATTTGTTGGATAAGTTAACAAGTAACAATATTGAACAGCAAAGGGCGGATGCTGGTGAGCTCCGGTTGCTAGCCAAGAGGAATGCAGATAACCGAGTATGTATTGCCGAGGCAGGAGCAATACCGCTTCTCGTAGAATTGTTATCTTTTGGTGATCCTCGAACTCAAGAGCACGCCGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTTGACGTACTAAGAAATGGAAGCATGGAGGATAGAGAAAACGCAGCCACGGCTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAAGTTTCAATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGTTACTTTGCAAAGGTACTCCAAGAGGCAAAAAAGATGCGGCTACTGCAATATTTAACTTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTAAAAGCCGGGATAGTTGCTGCACTGATACGGTTTATGAAGGACGCGGGGGGTGGGATGGTTGACGAAGCGCTAGCTATAATGGCAATCCTTGCAGGCCATCACGAAGGCAGGATGGCAATCGGTCAGGCTGAGCCAATTCCTATTTTAGTTGAGGTTATACGAACCGGATCACCGCGAAACCGGGAGAATGCGGCTGCGGTTTTGTGGCCTGTATGTACAGGAGATATAGTGCAATTAAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAAGGATTATCAGAGAATGGAACTGATATAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAACGAATTGAAGGGGAGGATAGTTTACAAAATTCCTAG 1848 0.4205 MHFREISGLPECQNVCKRMYGNLICRVKLLSPLFEELKDCDETLCDEQLGAFEALRVALDLAMILLKFVNQGSKLYPALQRNNAADKFQQVTEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQTKFADLQLDLDMAVALKEKDHDPAILKRLSEKLHLRAINDLKKESSKLHELVIASNGELADSFETVSSLLRKLKDWVLTENPEIDNAYENEKVSVKHRSPVIPDDFRCPISLELMKDPVIVSIGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLNSLIGLWCESNGIELPKKQGSCKTTKSGTSLSDCDRIAIKDLLDKLTSNNIEQQRADAGELRLLAKRNADNRVCIAEAGAIPLLVELLSFGDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEDRENAATALFSLSVLDENKVSIGAAGAIPALIKLLCKGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAALIRFMKDAGGGMVDEALAIMAILAGHHEGRMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWPVCTGDIVQLKLAKEHGAEEALQGLSENGTDIAKRKAGSILELLQRIEGEDSLQNS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01479 615 SMART Ubox_2 235 298 IPR003613 GO:0004842|GO:0016567
Vivi4g01479 615 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Vivi4g01479 615 Pfam Armadillo/beta-catenin-like repeat 442 480 IPR000225 GO:0005515
Vivi4g01479 615 FunFam RING-type E3 ubiquitin transferase 314 609 - -
Vivi4g01479 615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 305 IPR013083 -
Vivi4g01479 615 FunFam RING-type E3 ubiquitin transferase 2 105 - -
Vivi4g01479 615 Gene3D - 315 441 IPR011989 -
Vivi4g01479 615 ProSiteProfiles U-box domain profile. 231 305 IPR003613 GO:0004842|GO:0016567
Vivi4g01479 615 PANTHER U BOX DOMAIN-CONTAINING 19 604 - -
Vivi4g01479 615 SUPERFAMILY RING/U-box 231 307 - -
Vivi4g01479 615 Gene3D - 3 106 IPR036537 GO:0007166
Vivi4g01479 615 SMART arm_5 523 563 IPR000225 GO:0005515
Vivi4g01479 615 SMART arm_5 400 440 IPR000225 GO:0005515
Vivi4g01479 615 SMART arm_5 482 522 IPR000225 GO:0005515
Vivi4g01479 615 SMART arm_5 359 399 IPR000225 GO:0005515
Vivi4g01479 615 SMART arm_5 441 481 IPR000225 GO:0005515
Vivi4g01479 615 SUPERFAMILY ARM repeat 329 603 IPR016024 -
Vivi4g01479 615 CDD RING-Ubox_PUB 233 285 IPR045210 -
Vivi4g01479 615 Gene3D - 442 604 IPR011989 -
Vivi4g01479 615 Pfam U-box domain 232 302 IPR003613 GO:0004842|GO:0016567
Vivi4g01479 615 Coils Coil 110 130 - -
Vivi4g01479 615 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 412 IPR000225 GO:0005515
Vivi4g01479 615 FunFam RING-type E3 ubiquitin transferase 231 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01479 Vivi-Chr4 56335831 56338926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01479 4 608 U-box Gene Family AT3G54850 64.851 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01479 - - vvo:131594834 1197.57