Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01478 ATGATGATCTCCTATACAACGAGGAAACCTCCAGCATCTTATCCAGAGATTTGCCGGCGGAAAGCTTCTCTGATGTCGATTTGTCTCCGTCGGAGGAGGAAGAGTTATGCACTTCAGGTATCTTTCCGGTTATTGTTTATGGTTCCTTTCTTCCCCGTCATATATTCTACCGTCTTCATGCATTGTGTGCATATCTCCGATGCCTTTTTGTTGCTTTCCGTGTTCTTTTCACGGGATTCCTTCAGGGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGCAAGAGGATGTATGGGAATTTGATCTGTAGGGTGAAGCTTCTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGACCCTTTGTGATGAACAGCTTGGAGCTTTTGAAGCTTTAAGGGTTGCTTTGGATTTGGCTATGATCCTTCTAAAGTTTGTTAACCAAGGAAGTAAGCTTTATCCGGCTTTACAGAGGAATAATGCAGCGGATAAGTTCCAACAAGTAACTGAAAAAATTGAAGCTGCACTGAGTGATATTTCGTACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATAGAATTGGTGCATGCTCAGTTCAAAAGAGCCAAAGCTCAAACGAAATTTGCTGATTTACAACTAGATTTGGATATGGCTGTAGCACTGAAAGAAAAAGACCATGATCCTGCTATACTCAAAAGGCTTTCCGAGAAGCTGCATTTGAGGGCTATAAATGATTTAAAGAAAGAGTCTAGTAAATTACACGAATTGGTCATAGCAAGCAATGGAGAATTAGCGGACAGCTTTGAAACAGTCTCGTCTCTTCTTAGGAAACTGAAGGACTGGGTGCTCACTGAAAATCCGGAGATTGATAATGCATATGAGAACGAGAAAGTGTCAGTTAAGCATCGGTCTCCTGTAATCCCAGATGATTTTCGATGTCCTATATCGCTTGAACTAATGAAAGATCCTGTAATTGTATCTATCGGTCAGACATATGAAAGATCGTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACTTGCCCTAAAACACAGCAAACACTTCTGCATACCGCCCTTACTCCTAACTATGTTTTGAATAGTCTGATTGGTTTATGGTGTGAAAGCAATGGCATTGAGCTACCAAAGAAGCAAGGTAGCTGTAAAACAACGAAATCCGGAACCAGTCTTTCAGATTGTGACAGAATTGCTATCAAAGATTTGTTGGATAAGTTAACAAGTAACAATATTGAACAGCAAAGGGCGGATGCTGGTGAGCTCCGGTTGCTAGCCAAGAGGAATGCAGATAACCGAGTATGTATTGCCGAGGCAGGAGCAATACCGCTTCTCGTAGAATTGTTATCTTTTGGTGATCCTCGAACTCAAGAGCACGCCGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTTGACGTACTAAGAAATGGAAGCATGGAGGATAGAGAAAACGCAGCCACGGCTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAAGTTTCAATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGTTACTTTGCAAAGGTACTCCAAGAGGCAAAAAAGATGCGGCTACTGCAATATTTAACTTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTAAAAGCCGGGATAGTTGCTGCACTGATACGGTTTATGAAGGACGCGGGGGGTGGGATGGTTGACGAAGCGCTAGCTATAATGGCAATCCTTGCAGGCCATCACGAAGGCAGGATGGCAATCGGTCAGGCTGAGCCAATTCCTATTTTAGTTGAGGTTATACGAACCGGATCACCGCGAAACCGGGAGAATGCGGCTGCGGTTTTGTGGCCTGTATGTACAGGAGATATAGTGCAATTAAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAAGGATTATCAGAGAATGGAACTGATATAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAACGAATTGAAGGGGAGGATAGTTTACAAAATTCCTAG 2082 0.4236 MMISYTTRKPPASYPEICRRKASLMSICLRRRRKSYALQVSFRLLFMVPFFPVIYSTVFMHCVHISDAFLLLSVFFSRDSFREISGLPECQNVCKRMYGNLICRVKLLSPLFEELKDCDETLCDEQLGAFEALRVALDLAMILLKFVNQGSKLYPALQRNNAADKFQQVTEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQTKFADLQLDLDMAVALKEKDHDPAILKRLSEKLHLRAINDLKKESSKLHELVIASNGELADSFETVSSLLRKLKDWVLTENPEIDNAYENEKVSVKHRSPVIPDDFRCPISLELMKDPVIVSIGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLNSLIGLWCESNGIELPKKQGSCKTTKSGTSLSDCDRIAIKDLLDKLTSNNIEQQRADAGELRLLAKRNADNRVCIAEAGAIPLLVELLSFGDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEDRENAATALFSLSVLDENKVSIGAAGAIPALIKLLCKGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAALIRFMKDAGGGMVDEALAIMAILAGHHEGRMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWPVCTGDIVQLKLAKEHGAEEALQGLSENGTDIAKRKAGSILELLQRIEGEDSLQNS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01478 693 FunFam RING-type E3 ubiquitin transferase 309 383 - -
Vivi4g01478 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 383 IPR013083 -
Vivi4g01478 693 FunFam RING-type E3 ubiquitin transferase 79 183 - -
Vivi4g01478 693 SMART arm_5 601 641 IPR000225 GO:0005515
Vivi4g01478 693 SMART arm_5 478 518 IPR000225 GO:0005515
Vivi4g01478 693 SMART arm_5 560 600 IPR000225 GO:0005515
Vivi4g01478 693 SMART arm_5 437 477 IPR000225 GO:0005515
Vivi4g01478 693 SMART arm_5 519 559 IPR000225 GO:0005515
Vivi4g01478 693 Gene3D - 80 183 IPR036537 GO:0007166
Vivi4g01478 693 SUPERFAMILY RING/U-box 309 385 - -
Vivi4g01478 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 448 490 IPR000225 GO:0005515
Vivi4g01478 693 ProSiteProfiles U-box domain profile. 309 383 IPR003613 GO:0004842|GO:0016567
Vivi4g01478 693 CDD RING-Ubox_PUB 311 363 IPR045210 -
Vivi4g01478 693 FunFam RING-type E3 ubiquitin transferase 392 687 - -
Vivi4g01478 693 SMART Ubox_2 313 376 IPR003613 GO:0004842|GO:0016567
Vivi4g01478 693 Gene3D - 394 520 IPR011989 -
Vivi4g01478 693 Pfam Armadillo/beta-catenin-like repeat 437 476 IPR000225 GO:0005515
Vivi4g01478 693 Pfam Armadillo/beta-catenin-like repeat 520 558 IPR000225 GO:0005515
Vivi4g01478 693 Coils Coil 684 693 - -
Vivi4g01478 693 Coils Coil 188 208 - -
Vivi4g01478 693 Gene3D - 521 682 IPR011989 -
Vivi4g01478 693 PANTHER U BOX DOMAIN-CONTAINING 97 682 - -
Vivi4g01478 693 SUPERFAMILY ARM repeat 407 681 IPR016024 -
Vivi4g01478 693 Pfam U-box domain 310 380 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01478 Vivi-Chr4 56335831 56338926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01478 79 686 U-box Gene Family AT3G54850 64.860 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01478 - - vvo:131594834 1356.27