Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01477 ATGGACAAAAATCCCCATTCAGAAATTCAACTCCCTCCGGGATTTAGATTCCACCCTTCTGATGAAGAGCTTGTAGTTCACTATCTAAGAAACAAAGTTACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGCAATAGATCTCTACAAGTATAATCCATGGGAGAGTCCATGTAAGGCTTTGTTTGGTGAAGAAGAATGGTATTTCTTTACTCCAAGGGAGAGAAAATATCCGAAAGGACTAAGGCCTAATAGAGCAGCTGGTGCAGGTTATTGGAAAGCTACTGGAACTGATAAACCTATTCTGACTTCATGTGGTTTGAAAAGCATAGGAGTGAAGAAAGCTCTGGTGTTCTATAAGGGACGTCCACCAAAAGGATCCAAAACTGAATGGATCATGCATGAATATAGGCTGCATGATTCAGTGATCTCAAATTCCAAGCATAACAGTTCTAACTTCCATCTGGATGAGTGGGTGTTATGTCGAGTTCGACAAAAAGCCAGAAGCCTGAGAAGGGGTTTGGAAGATTCAAATGAACTTAGTTATTATGAACCAACAAGTCAGTTTCATCAAATGAATGAGAACTCTAATCCTGAACCAGTGAAAAACTATGTGCAGAATGAATATCCAATGTTACCTTATATTCTGACTTCTAAGAGTGTTCTTCCCAATACCATTGGTATGTCATCAGAGAATGTAAAACCACATGCTTCATTTTATGAAGAAAACAACTTAAACATAATAGGAGCACAGTTCTTATCATCTGCAACTGAGGGATTGTTTGATAATCCTCTGAAGAGAAAAGTAGTTGAAAATAATAGCGATACTGACTTTTATGCTGTCCTCAATCAAAACGTAAGCAGAGAAGTTGAAAAAGATTCAAGCAAAGTGTACAATTTCAGCAACTTTGATCAGTGGAGTTCAATCATACAACCTCAAGAGCTTAATAGCTTAGCCTTCACTGGATATACATAA 975 0.3795 MDKNPHSEIQLPPGFRFHPSDEELVVHYLRNKVTSSPLPASFIAAIDLYKYNPWESPCKALFGEEEWYFFTPRERKYPKGLRPNRAAGAGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSVISNSKHNSSNFHLDEWVLCRVRQKARSLRRGLEDSNELSYYEPTSQFHQMNENSNPEPVKNYVQNEYPMLPYILTSKSVLPNTIGMSSENVKPHASFYEENNLNIIGAQFLSSATEGLFDNPLKRKVVENNSDTDFYAVLNQNVSREVEKDSSKVYNFSNFDQWSSIIQPQELNSLAFTGYT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01477 324 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vivi4g01477 324 Gene3D NAC domain 20 171 IPR036093 GO:0003677|GO:0006355
Vivi4g01477 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 244 - -
Vivi4g01477 324 ProSiteProfiles NAC domain profile. 11 166 IPR003441 GO:0003677|GO:0006355
Vivi4g01477 324 SUPERFAMILY NAC domain 8 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01477 Vivi-Chr4 56156437 56157762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01477 7 166 NAC Transcription Factor Family AT1G69490 66.250 1.05e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g01477 NAM 4.3e-37 No_clan