Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01470 ATGTCAACAACCACCCAAGTGGTGGTTCTCGACAACGGCGGAGGTCTAATCAAAGCAGGCTTCGGCGGCGAACGCGACCCCTCCGCCATTCTCCCCAACTGTCTCCACAAACCCCTCGCCTCCAAAAAATGGCTCCACCCAAATCCCCTCAACACTCCCGCCTCCGCCGACCAAGACCTCACCTCCGCCTCCGTCCGCCGTCCCATGGATCGCGGCTACCTAATAAACCCCGACCTCCAACGCGAAATCTGGTCCCACCTCTTCACCTCCATCCTTCGCATAAACCCTTCCCAATCCTCCCTCCTCCTCACCGAACCCCTCTTCTCTCTCCCTTCCATCCAACACTCCCTCGACGAACTCGTCTTCGAAGATTTCAACTTTACCTCCCTCTACGTCGCCGACTCCCCTTCCCTCGTTCATCTCTACGAAACCAGCCGCAGCCCTAACGGCCTTCTCTCTAAAGCACAATGCAGTCTCGTCGTCGATTGCGGTTTCTCCTTCACGCACGCTTCACCTGTCTTTCAAAACTTCACTCTCAACTACGCGGTTAAGCGAATCGATTTAGGTGGGAAAGCCCTAACGAACTACCTCAAGGAACTTATTTCGTTTCGCTCTGTTAATGTCATGGATGAAACTTTCATTATTGATGATGTTAAGGAGAATCTCTGCTTTGTTTCCGTCGATGTCCCAAGACACCTTGACATTGCTAGAAAGAGTGGAAGAGAGAATCTCTTGAGGTGTACTTATGTGCTACCTGATGGTGTCTCGCACACAAAAGGGTTTCTTAAATATCCTGAACAAGCTAAGAGGTATCTTGTTCCTGATTGTAAGAAGGAGAATATCGATGATCACGAGGAAATTCCTCAACAACAGCATGAGAACAATAGACAGAAAGTTGATTTGACCAAAAATGAATTTGACTTGACCAATGAACGGTTTCTTGTCCCGGAGATGATTTTCCGTCCAGCTGATTTGGGAATGAACCAGGCTGGGCTTCCAGATTGTATCGTACGAGCAGTAAATGCCTGCCATCCGCACCTCCACCCCATACTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTGTTTCCTCACTTTGCTGAGAGACTAGAGAAGGAGCTTCGGCCTCTGGTTCCTGATGACTATAATGTGAAGATAACTACACAAGAAGATCCCCTATTAGGTGTTTGGCGTGGAGGGTCTCTCCTGGCATCAAGTCCCGATTTTGATTCAATGTGTGTGACTAAGGCTGAGTATGAGGAGCATGGTTCTGCTAGATGTCGCAAGAGATTTTTTCATTGA 1305 0.4881 MSTTTQVVVLDNGGGLIKAGFGGERDPSAILPNCLHKPLASKKWLHPNPLNTPASADQDLTSASVRRPMDRGYLINPDLQREIWSHLFTSILRINPSQSSLLLTEPLFSLPSIQHSLDELVFEDFNFTSLYVADSPSLVHLYETSRSPNGLLSKAQCSLVVDCGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELISFRSVNVMDETFIIDDVKENLCFVSVDVPRHLDIARKSGRENLLRCTYVLPDGVSHTKGFLKYPEQAKRYLVPDCKKENIDDHEEIPQQQHENNRQKVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLPDCIVRAVNACHPHLHPILYESIILTGGSTLFPHFAERLEKELRPLVPDDYNVKITTQEDPLLGVWRGGSLLASSPDFDSMCVTKAEYEEHGSARCRKRFFH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01470 434 Gene3D Actin; Chain A, domain 4 194 331 - -
Vivi4g01470 434 SUPERFAMILY Actin-like ATPase domain 156 433 IPR043129 -
Vivi4g01470 434 Gene3D Actin; Chain A, domain 2 35 68 - -
Vivi4g01470 434 SUPERFAMILY Actin-like ATPase domain 4 139 IPR043129 -
Vivi4g01470 434 Gene3D - 8 425 - -
Vivi4g01470 434 FunFam Actin-related protein 6 133 193 - -
Vivi4g01470 434 SMART actin_3 5 433 IPR004000 -
Vivi4g01470 434 CDD NBD_sugar-kinase_HSP70_actin 8 200 - -
Vivi4g01470 434 PANTHER ACTIN 7 425 IPR004000 -
Vivi4g01470 434 FunFam Putative actin-related protein 5 397 425 - -
Vivi4g01470 434 Pfam Actin 4 433 IPR004000 -
Vivi4g01470 434 Gene3D - 133 399 - -
Vivi4g01470 434 FunFam Putative actin-related protein 6 194 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01470 Vivi-Chr4 55191657 55195239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01470 6 433 Cytoskeleton Gene Families AT1G49240 28.241 2.64e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01470 K11662 - gmx:100819827 699.893