Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01469 ATGTCAACAACCACCCAAGTGGTGGTTCTCGACAACGGCGGAGGTCTAATCAAAGCAGGCTTCGGCGGCGAACGCGACCCCTCCGCCATTCTCCCCAACTGTCTCCACAAACCCCTCGCCTCCAAAAAATGGCTCCACCCAAATCCCCTCAACACTCCCGCCTCCGCCGACCAAGACCTCACCTCCGCCTCCGTCCGCCGTCCCATGGATCGCGGCTACCTAATAAACCCCGACCTCCAACGCGAAATCTGGTCCCACCTCTTCACCTCCATCCTTCGCATAAACCCTTCCCAATCCTCCCTCCTCCTCACCGAACCCCTCTTCTCTCTCCCTTCCATCCAACACTCCCTCGACGAACTCGTCTTCGAAGATTTCAACTTTACCTCCCTCTACGTCGCCGACTCCCCTTCCCTCGTTCATCTCTACGAAACCAGCCGCAGCCCTAACGGCCTTCTCTCTAAAGCACAATGCAGTCTCGTCGTCGATTGCGGTTTCTCCTTCACGCACGCTTCACCTGTCTTTCAAAACTTCACTCTCAACTACGCGGTTAAGCGAATCGATTTAGGTGGGAAAGCCCTAACGAACTACCTCAAGGAACTTATTTCGTTTCGCTCTGTTAATGTCATGGATGAAACTTTCATTATTGATGATGTTAAGGAGAATCTCTGCTTTGTTTCCGTCGATGTCCCAAGACACCTTGACATTGCTAGAAAGAGTGGAAGAGAGAATCTCTTGAGGTGTACTTATGTGCTACCTGATGGTGTCTCGCACACAAAAGGGTTTCTTAAATATCCTGAACAAGCTAAGAGGTATCTTGTTCCTGATTGTAAGAAGGAGAATATCGATGATCACGAGGAAATTCCTCAACAACAGCATGAGAACAATAGACAGAAAGTTGATTTGACCAAAAATGAATTTGACTTGACCAATGAACGGTTTCTTGTCCCGGAGATGATTTTCCGTCCAGCTGATTTGGGAATGAACCAGGCTGGGCTTCCAGATTGTATCGTACGAGCAGTAAATGCCTGCCATCCGCACCTCCACCCCATACTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTGTTTCCTCACTTTGCTGAGAGACTAGAGAAGGAGCTTCGGCCTCTGGTTCCTGATGACTATAATGTGAAGATAACTACACAAGAAGAGTGTTTGGCGTGGAGGGTCTCTCCTGGCATCAAGTCCCGATTTTGA 1221 0.493 MSTTTQVVVLDNGGGLIKAGFGGERDPSAILPNCLHKPLASKKWLHPNPLNTPASADQDLTSASVRRPMDRGYLINPDLQREIWSHLFTSILRINPSQSSLLLTEPLFSLPSIQHSLDELVFEDFNFTSLYVADSPSLVHLYETSRSPNGLLSKAQCSLVVDCGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELISFRSVNVMDETFIIDDVKENLCFVSVDVPRHLDIARKSGRENLLRCTYVLPDGVSHTKGFLKYPEQAKRYLVPDCKKENIDDHEEIPQQQHENNRQKVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLPDCIVRAVNACHPHLHPILYESIILTGGSTLFPHFAERLEKELRPLVPDDYNVKITTQEECLAWRVSPGIKSRF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01469 406 SUPERFAMILY Actin-like ATPase domain 4 139 IPR043129 -
Vivi4g01469 406 Gene3D - 297 392 - -
Vivi4g01469 406 Pfam Actin 4 392 IPR004000 -
Vivi4g01469 406 Gene3D - 8 132 - -
Vivi4g01469 406 CDD NBD_sugar-kinase_HSP70_actin 8 200 - -
Vivi4g01469 406 FunFam Actin-related protein 6 133 193 - -
Vivi4g01469 406 Gene3D Actin; Chain A, domain 4 194 258 - -
Vivi4g01469 406 Gene3D - 133 193 - -
Vivi4g01469 406 Gene3D Actin; Chain A, domain 2 35 68 - -
Vivi4g01469 406 SMART actin_3 5 403 IPR004000 -
Vivi4g01469 406 SUPERFAMILY Actin-like ATPase domain 156 392 IPR043129 -
Vivi4g01469 406 PANTHER ACTIN 7 387 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01469 Vivi-Chr4 55191657 55195242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01469 6 392 Cytoskeleton Gene Families AT3G18780 27.110 9.62e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01469 K11662 - gmx:100819827 619.002