Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01448 ATGCCAGATTTGGGGAACTGCCCTCTCCCGCTCGTACCCTGCTCCCCCGTCAAGGCCACTGACGCCGCCGACGATGCAGCTGCTGTCGAACCACTACCCAGTGATTTTGGTTCCGATAATGGCGTTCATGCCAGGGTTTTGAAGAGGAGTCGCGGTTCTCTCCGGAAGACTGGCAATGGTAAGAGTTTGTGGGACCGCCTTACGGATCCTCAATCTCTCCCGTTTCTCGTCGGTGCTCCGAAGATGGTGGAATGCTGTTTCTGCCACCATTCTGTGTGTCCCGGGGAGGAGCTGCTGTGTTCTGTTCATGGATGTAACTCATGCTATCATATGGAGTGTGCAAAAGAAGTCAGTGGGGTTTCAAATCTGAAAAAGAAAAAGTTCAAGTGTCCACAGCATGTGTGCTTCATTTGCAAGCAAAAGACGCATTTGCGGTGCGTGCGTTGCACAACGGCTTTCCATAGTAAATGTGCACCATGGCCTGAAGCTGTGATCCCTCTGAAAGATCATCCTGGACAAGCTGTTTGTTGGAGACACCCTTCTGACTGGCGCCTGGATAGAAAGGAGCAGCCTGATACTCCAACAAGTGACATTTCGGAAGTATTTTGTCGTTTGCCTCTTCCTTTTGTTAACGAGGAATTCAAGATCGACTTCACTTGGAAAGACATGGACAGTAAGATGGAGCCACCGCCGTATATACACATACGACGCAATATATACCTAGTGAAGAAAAAGCGTAGTGATGTAGATGATGATGCTGGGTGCACCAACTGCATTTCTTCATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGGTGCTCTGAAAATTGTACCAATCGGCCATTTCGCAAGGAGAAAAAGATCAGGATTGTCAAGACTGAGTTTTGTGGATGGGGAGCTGAGGCTGCTGAAACAATTGAGAAAGGAGGGTTCATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTCGTGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTGCAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCATCACGTTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACTCGCGTTGGTGTATTTGCTGCTCGTTCGATAGAAGTTGGAGAGTCATTAACATACGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAGTGCCACTGCGGTGCACAGAAATGTCAAGGATTTCTAGGTTCAAAAAAGAAAATTAACAAAGTAGACCTCTGTTGGGGGGCAAAACGTAAGCGAACATTATGCACATCGGCAGTAAAAGCTGCTGATTTGCCAAAATATTATATGTAG 1407 0.4563 MPDLGNCPLPLVPCSPVKATDAADDAAAVEPLPSDFGSDNGVHARVLKRSRGSLRKTGNGKSLWDRLTDPQSLPFLVGAPKMVECCFCHHSVCPGEELLCSVHGCNSCYHMECAKEVSGVSNLKKKKFKCPQHVCFICKQKTHLRCVRCTTAFHSKCAPWPEAVIPLKDHPGQAVCWRHPSDWRLDRKEQPDTPTSDISEVFCRLPLPFVNEEFKIDFTWKDMDSKMEPPPYIHIRRNIYLVKKKRSDVDDDAGCTNCISSCSDDCVCRVQCISCSKACRCSENCTNRPFRKEKKIRIVKTEFCGWGAEAAETIEKGGFIIEYIGEVIDDASCEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGESLTYDYRFVQFGPEVKCHCGAQKCQGFLGSKKKINKVDLCWGAKRKRTLCTSAVKAADLPKYYM 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01448 468 ProSiteProfiles Post-SET domain profile. 417 433 IPR003616 -
Vivi4g01448 468 CDD SET_ASHR3-like 295 433 - -
Vivi4g01448 468 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 464 IPR025787 -
Vivi4g01448 468 SMART set_7 294 417 IPR001214 GO:0005515
Vivi4g01448 468 FunFam Histone-lysine N-methyltransferase 209 443 - -
Vivi4g01448 468 Gene3D SET domain 210 452 IPR046341 -
Vivi4g01448 468 ProSiteProfiles SET domain profile. 294 411 IPR001214 GO:0005515
Vivi4g01448 468 ProSiteProfiles AWS domain profile. 251 294 IPR006560 GO:0005634|GO:0042054
Vivi4g01448 468 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 245 278 IPR017896 -
Vivi4g01448 468 Pfam SET domain 305 410 IPR001214 GO:0005515
Vivi4g01448 468 SUPERFAMILY SET domain 213 423 IPR046341 -
Vivi4g01448 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 182 IPR013083 -
Vivi4g01448 468 SMART PHD_3 84 134 IPR001965 -
Vivi4g01448 468 SMART PHD_3 135 180 IPR001965 -
Vivi4g01448 468 PANTHER SET DOMAIN PROTEINS 58 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01448 Vivi-Chr4 53744899 53755040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01448 275 432 C2H2 Transcription Factor Family AT2G23740 35.196 6.15e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g01448 SET 8.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01448 - - tpra:123884811 802.357