Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01447 ATGCCAGATTTGGGGAACTGCCCTCTCCCGCTCGTACCCTGCTCCCCCGTCAAGGCCACTGACGCCGCCGACGATGCAGCTGCTGTCGAACCACTACCCAGTGATTTTGGTTCCGATAATGGCGTTCATGCCAGGGTTTTGAAGAGGAGTCGCGGTTCTCTCCGGAAGACTGGCAATGGTAAGAGTTTGTGGGACCGCCTTACGGATCCTCAATCTCTCCCGTTTCTCGTCGGTGCTCCGAAGATGGTGGAATGCTGTTTCTGCCACCATTCTGTGTGTCCCGGGGAGGAGCTGCTGTGTTCTGTTCATGGATGTAACTCATGCTATCATATGGAGTGTGCAAAAGAAGTCAGTGGGGTTTCAAATCTGAAAAAGAAAAAGTTCAAGTGTCCACAGCATGTGTGCTTCATTTGCAAGCAAAAGACGCATTTGCGGTGCGTGCGTTGCACAACGGCTTTCCATAGTAAATGTGCACCATGGCCTGAAGCTGTGATCCCTCTGAAAGATCATCCTGGACAAGCTGTTTGTTGGAGACACCCTTCTGACTGGCGCCTGGATAGAAAGCCTGATACTCCAACAAGTGACATTTCGGAAGTATTTTGTCGTTTGCCTCTTCCTTTTGTTAACGAGGAATTCAAGATCGACTTCACTTGGAAAGACATGGACAGTAAGATGGAGCCACCGCCGTATATACACATACGACGCAATATATACCTAGTGAAGAAAAAGCGTAGTGATGTAGATGATGATGCTGGGTGCACCAACTGCATTTCTTCATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGGTGCTCTGAAAATTGTACCAATCGGCCATTTCGCAAGGAGAAAAAGATCAGGATTGTCAAGACTGAGTTTTGTGGATGGGGAGCTGAGGCTGCTGAAACAATTGAGAAAGGAGGGTTCATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTCGTGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTGCAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCATCACGTTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACTCGCGTTGGTGTATTTGCTGCTCGTTCGATAGAAGTTGGAGAGTCATTAACATACGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAGTGCCACTGCGGTGCACAGAAATGTCAAGGATTTCTAGGTTCAAAAAAGAAAATTAACAAAGTAGACCTCTGTTGGGGGGCAAAACGTAAGCGAACATTATGCACATCGGCAGTAAAAGCTGCTGATTTGCCAAAATATTATATGTAG 1401 0.4554 MPDLGNCPLPLVPCSPVKATDAADDAAAVEPLPSDFGSDNGVHARVLKRSRGSLRKTGNGKSLWDRLTDPQSLPFLVGAPKMVECCFCHHSVCPGEELLCSVHGCNSCYHMECAKEVSGVSNLKKKKFKCPQHVCFICKQKTHLRCVRCTTAFHSKCAPWPEAVIPLKDHPGQAVCWRHPSDWRLDRKPDTPTSDISEVFCRLPLPFVNEEFKIDFTWKDMDSKMEPPPYIHIRRNIYLVKKKRSDVDDDAGCTNCISSCSDDCVCRVQCISCSKACRCSENCTNRPFRKEKKIRIVKTEFCGWGAEAAETIEKGGFIIEYIGEVIDDASCEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGESLTYDYRFVQFGPEVKCHCGAQKCQGFLGSKKKINKVDLCWGAKRKRTLCTSAVKAADLPKYYM 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01447 466 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 243 276 IPR017896 -
Vivi4g01447 466 SMART set_7 292 415 IPR001214 GO:0005515
Vivi4g01447 466 Pfam SET domain 303 408 IPR001214 GO:0005515
Vivi4g01447 466 ProSiteProfiles AWS domain profile. 249 292 IPR006560 GO:0005634|GO:0042054
Vivi4g01447 466 Gene3D SET domain 208 450 IPR046341 -
Vivi4g01447 466 PANTHER SET DOMAIN PROTEINS 58 452 - -
Vivi4g01447 466 CDD SET_ASHR3-like 293 431 - -
Vivi4g01447 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 182 IPR013083 -
Vivi4g01447 466 SUPERFAMILY SET domain 211 421 IPR046341 -
Vivi4g01447 466 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 462 IPR025787 -
Vivi4g01447 466 ProSiteProfiles SET domain profile. 292 409 IPR001214 GO:0005515
Vivi4g01447 466 SMART PHD_3 84 134 IPR001965 -
Vivi4g01447 466 SMART PHD_3 135 180 IPR001965 -
Vivi4g01447 466 ProSiteProfiles Post-SET domain profile. 415 431 IPR003616 -
Vivi4g01447 466 FunFam Histone-lysine N-methyltransferase 207 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01447 Vivi-Chr4 53744898 53755043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01447 273 430 C2H2 Transcription Factor Family AT2G23740 35.196 5.40e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g01447 SET 8.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01447 - - tpra:123884811 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01447 4 53744898 53755043 Vivi4g01447 4 53744898 53755043 ECH