Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01442 ATGGCCAAACTGTCTCAAGAACAAACTCAAAAAAACAATGCAAGTAATAACAATAACCTTAATGCAACTAACACCAAAGTGAAAAGAACAAGGAGAAGTGTCCCGAGGGATTCTCCAATTCAACGCAGCTCAATATATAGAGGAGTCACTAGGCATAGATGGACCGGGCGATACGAAGCTCATTTATGGGACAAGAATAGTTGGAATGAATCGCAAAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGATGATGAAGAGACTGCTGCACATGCTTATGATCTAGCTGCATTGAAATATTGGGGCCGAGATACTATTCTTAACTTTCCGTTATGTAGTTACGAGAATCAATTGCGAGAAATGGAGGATCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGTGGTTTTTCTCGCGGAGTTTCTAAATATAGAGGCGTGGCAAGACACCATCATAATGGAAGGTGGGAGGCTCGTATTGGGAGGGTTTTTGGCAACAAATATCTTTATCTTGGAACATATGCTACACAAGAAGAAGCAGCCACAGCATACGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTCACCAATTTCGACCTCAGCCGTTATATTAAGTGGCTAAAGCCTAATCACAATGATAACAATAACAAACTTGTTCATAATTCAAGTAATAACACAATCTCTGACACCAAATTCATCCCAAACATGATGATGACTAATCAAAATGAGTCATTAGGAGGAGAAGAAGAAGAACTAGTACAGCCTCGGCCAGCTGGCACGACGTCGGCATTAGGTCTTTTGCTTCAATCATCAAAGTTTAAGGAGATGATGGAAATGACAAATGCTGCTGATTTGTCAACACCAGAAAACTCATACACATTTCCTGATCACATGCAGACATACTTTGAGTCTTCCACTGAATATGGGGATGATTTATTCAATGTGCCCTCTTTATTCCCTTCTCATGATGACTTTGATCACGGCTTCAAGGTCTAG 1014 0.4063 MAKLSQEQTQKNNASNNNNLNATNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNSWNESQNKKGRQVYLGAYDDEETAAHAYDLAALKYWGRDTILNFPLCSYENQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNDNNNKLVHNSSNNTISDTKFIPNMMMTNQNESLGGEEEELVQPRPAGTTSALGLLLQSSKFKEMMEMTNAADLSTPENSYTFPDHMQTYFESSTEYGDDLFNVPSLFPSHDDFDHGFKV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01442 337 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 232 - -
Vivi4g01442 337 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Vivi4g01442 337 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 FunFam AP2-like ethylene-responsive transcription factor 44 113 - -
Vivi4g01442 337 CDD AP2 44 111 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 SUPERFAMILY DNA-binding domain 44 112 IPR016177 GO:0003677
Vivi4g01442 337 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Vivi4g01442 337 MobiDBLite consensus disorder prediction 1 38 - -
Vivi4g01442 337 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Vivi4g01442 337 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Vivi4g01442 337 MobiDBLite consensus disorder prediction 1 28 - -
Vivi4g01442 337 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Vivi4g01442 337 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01442 Vivi-Chr4 53638453 53639988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01442 41 209 AP2-EREBP Transcription Factor Family AT5G57390 72.189 2.06e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vivi4g01442 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01442 K09285 - gmx:100795869 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00410 1 7974510 7977134 Vivi4g01442 4 53638453 53639988 PCT