Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01441 ATGGAATTCGCGTTTACAATTAAGTCAACCAGCCAAACTACAAATTTGAAACGCCTACCTATGGCTAGGAGAGATTTTGGATCCAAAGGAAACAAGATACAACTCTTAACTAACCATTTTAGAATCGGCTCAACTAAGAATGAAGGTTACTTATATCATTATAATATTATTTTGCGTTATCAAGATGGACAACCTGTTGAAGGGAAAAGAGTGGGGAGAAAAGTCATGGACAAACTTCGTAAAACATACGATGTACTAAGAAGTCAAAATTTTGCATATGATGGTGAGAAAAATTTATTCACTCTTGATTCTCTACATCATACTAGACAAGATTTCATTGTTGTGTTAGATGAAGTTTCATCAATAAGGGTTGGAAATTACCCTGATACAACAAAAAGAATGAGGTTTCAATCTCAGTCCAAAACTTTTAAGGTTGAGATTAGTCATGTAAGAAAAATCTCATTACAAGAAATTGGAAATGCATTACGAGGTCACAAATCAGAGAATTACCAAGATGTATTAAATGTTTTGGGTGTTATATTGAGGCAAAATGCAACAAAAGAGGGATGTCTCTGCATTCGCCAGTCATACTTTCATGACAATCCAAAAAATATAACTAACCTTGATGGTGGTATTCAGTATTGTCGTGGTTTCCATTCAAGCTTTAGGGCCACACAAATGGGTTTGTCTCTTAATTTTGATGTGTCAGCTACATTACTTATAAAGCCTGGTCCTGTAGTGGATTTCCTACTCCATAACCAAAATATCCAGCAACCAAAGTGGATTGATTGGAGCAAGGCAAAAAGAATGCTTAAAAATATTAGAGTCAAAGTTAACAATAGAGAGTACAAAATCAGTGGACTAAGTGAGATGTCATGCAAAACACAAATGTTTTTAATTAAAAAAGGAAATGATGTTAATGGTGAAGCACGATTAAAGGAAATTACAATTTATGAATACTATAAACGCCACAAAAATATTGAACTTCACTATTCTATTGATATGCCATGTATTAATGTTGGCAAACCAAAGAAACCAATTTATTTTCCTATGGAGCTATGTACATTGGTCTCATTGCAACGATACACTAAGGTATTGTCCAACAAGCAAAGAATTCAATTGATGTTAGAGTCAAGAAATAATCCTCACGAAAGGAAAGAAGCTTTGTTATATTCTTTAAAAAGTCGTAGATATGATGACGAGCCTATGCTTCGCTCTTTTGGAATTTCTATTAAACCTTGTTTTACTCAAGTTAATGGTCGCGTTTTGCAAGCTCCAACTCTTGTTGTTGGAAAAGGACATGTATTTTGTCCTCAAAATGGAAGCTGGAATTTTAATAATAAGGAATTAATTGAACCCGTGAAGATTAAACGTTGGGCAATTGTAAACTTTTCATCACACTGTGATATAGAACATTTATGTAATATGATTAAAAAATATTCTAAAATGAAAGGAATGTTCTTTGATTCTCCGTTCCATATATTTGAGGAGAGTGAGCGTCATAGGAGTGAGTCACCATCTTCTAGAGTTTCTGCAATGTATGAAATAATAAAATCCAAGCTACCTGGACCCCCTACACATCCTCCTGCTCAACTTCTTTTGTGTATTCTTCCAATTAAAAAGAATTGTGAGATTTATGGTCCTTGGAAAAGGAGATGTCTTGTTGATGAAGGGATTGCAACTCAATGCATTGCTCCGACAAAAATTAATGATAATTATATTACTAATGTACTATTAAAAATTAATACAAAGCTTGGTGGGATGAATTTTCTTTTGTTATCCGAAATTGAGCGTTCCATACCATTATTTTCTAACATACCTACATTGGTAATTGGAATGGATGTTTCACATGGATCTCCATATCAATTAAATGTACCATCAGTTGTTGCGGTAGTTAGCTCAAGATATTGGCCTCAAATATCTCGTTATAGAGCTACAGTTCGTAGTCAATCATCGAAAGTAGAGATAATCCAATCTCTATTCGAGCCTGTTTCAGATACTAAGGATGATGGTATCATCAGTGAGGTTCTTAAGGACTTTTATGCAACTTCAGGAAGAAAGCCTCAACAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAATTCAACCAGATCCTCAACTTTGAATTGGATGAAATCATAAAGGCGTGCAAACATTTTGACGAAAGTTGGTGTCCAAAGTTTACTTTGATTGTTGCCCAAAAGAATCATCACACTAGGTTCTTCAAAGTCAATGCTCCTCAAGAAAATGTTTTACCAGGAACCGTTATTGATAACACTATATGTCATCCTGAAAACAATGATTTCTACATGTGTGCTCATGCTGGAAAAATTGGTACAAGTCGTCCTACTCATTACTATGTTTTATATGATGAAATTGGTTTCTCATCAGATAATTTGCAGGAATTGGTGCATTCTCTATGCTATGTGTATCAAAGAAGCACAAATGCCATATCTATAGTTGCACCAATTTATTATGCTCATGTAGCAGCAGCTCAAATATCACAATTTTTAAATTTTGATGAAACAAAAAATCAAAAGGAATTCATTGTACCCGGTATATCTCAAGTTCTTGAGTTACCACGTCTTCATGAACGAGTCATGAATACTATGTTTTTTTGTTGA 2628 0.3417 MEFAFTIKSTSQTTNLKRLPMARRDFGSKGNKIQLLTNHFRIGSTKNEGYLYHYNIILRYQDGQPVEGKRVGRKVMDKLRKTYDVLRSQNFAYDGEKNLFTLDSLHHTRQDFIVVLDEVSSIRVGNYPDTTKRMRFQSQSKTFKVEISHVRKISLQEIGNALRGHKSENYQDVLNVLGVILRQNATKEGCLCIRQSYFHDNPKNITNLDGGIQYCRGFHSSFRATQMGLSLNFDVSATLLIKPGPVVDFLLHNQNIQQPKWIDWSKAKRMLKNIRVKVNNREYKISGLSEMSCKTQMFLIKKGNDVNGEARLKEITIYEYYKRHKNIELHYSIDMPCINVGKPKKPIYFPMELCTLVSLQRYTKVLSNKQRIQLMLESRNNPHERKEALLYSLKSRRYDDEPMLRSFGISIKPCFTQVNGRVLQAPTLVVGKGHVFCPQNGSWNFNNKELIEPVKIKRWAIVNFSSHCDIEHLCNMIKKYSKMKGMFFDSPFHIFEESERHRSESPSSRVSAMYEIIKSKLPGPPTHPPAQLLLCILPIKKNCEIYGPWKRRCLVDEGIATQCIAPTKINDNYITNVLLKINTKLGGMNFLLLSEIERSIPLFSNIPTLVIGMDVSHGSPYQLNVPSVVAVVSSRYWPQISRYRATVRSQSSKVEIIQSLFEPVSDTKDDGIISEVLKDFYATSGRKPQQIIIFRDGVSESQFNQILNFELDEIIKACKHFDESWCPKFTLIVAQKNHHTRFFKVNAPQENVLPGTVIDNTICHPENNDFYMCAHAGKIGTSRPTHYYVLYDEIGFSSDNLQELVHSLCYVYQRSTNAISIVAPIYYAHVAAAQISQFLNFDETKNQKEFIVPGISQVLELPRLHERVMNTMFFC 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01441 875 SUPERFAMILY PAZ domain 238 395 IPR036085 GO:0005515
Vivi4g01441 875 Pfam N-terminal domain of argonaute 32 181 IPR032474 -
Vivi4g01441 875 Pfam Argonaute linker 2 domain 384 429 IPR032472 -
Vivi4g01441 875 ProSiteProfiles PAZ domain profile. 281 358 IPR003100 GO:0005515
Vivi4g01441 875 Pfam Argonaute linker 1 domain 193 241 IPR014811 -
Vivi4g01441 875 SMART DUF1785_2 191 243 IPR014811 -
Vivi4g01441 875 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 27 842 - -
Vivi4g01441 875 CDD PAZ_argonaute_like 243 357 - -
Vivi4g01441 875 Pfam Piwi domain 533 839 IPR003165 GO:0003676
Vivi4g01441 875 SMART Piwi_a_2 532 840 IPR003165 GO:0003676
Vivi4g01441 875 Pfam PAZ domain 247 374 IPR003100 GO:0005515
Vivi4g01441 875 CDD Piwi_ago-like 402 834 IPR045246 -
Vivi4g01441 875 FunFam Protein argonaute 3 600 875 - -
Vivi4g01441 875 Pfam Mid domain of argonaute 438 483 IPR032473 -
Vivi4g01441 875 Gene3D - 422 593 - -
Vivi4g01441 875 ProSiteProfiles Piwi domain profile. 532 840 IPR003165 GO:0003676
Vivi4g01441 875 SUPERFAMILY Ribonuclease H-like 528 838 IPR012337 -
Vivi4g01441 875 FunFam Protein argonaute 7 238 362 - -
Vivi4g01441 875 Gene3D - 599 875 IPR036397 GO:0003676
Vivi4g01441 875 Gene3D paz domain 237 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01441 Vivi-Chr4 53512874 53518144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01441 23 875 Eukaryotic Initiation Factors Gene Family AT5G43810 35.274 7.31e-160 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01441 K11593 - pop:7486850 1056.97