Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01440 ATGTTGATAACTGTAACAAAAGCCTCCCCTTCTCTCCGCTGTCCGTCGCTGTCGCTTAACAACCGTCGCATACCAACAAAACCCAAACTCTCTCCCCGTCTCCTCCGTTCATCTTCCCGTCAACACAACCTCTCCCTCCGTCTCCGTTCATCGTCCTCCTCCAATCTCTCCACCAGCTACGACCTAGCGAACTTCGATCCTTTAGGCATTAACACAGATTCATCTCCTACTTGGAAAAATCTACTCACTGTCTTTCAAGCCTCTTCGGAAAAGGATAAACCTCGAGGCGTAGCAGCTGCAATTGAGGATAGTTCAATTGATTTTGGTGATTTCTTTAATGGTCCACTGCCTGGGAAGTTTCTCAAGCTTTTAGGGTTTCTCGCATTGTCGAGGCTCGGTGTGTATATACCGTTAGGTGGAGTTAATAGGGACGCGTTTCTCGGAAATTTGGATCAGAACAGTTTATTATCTACTTTGGACTCGTTTTCTGGTGGAGGTATTGGTAGACTTGGGATATGCTCTCTTGGCATTGTTCCGTTCATCAATGCGCAGATTGTTTTTCAGCTTCTTGCTCAAGTGTATCCTAAATTGCAAGATCTTCAGAAGAAAGAAGGTGAGGCGGGAAGGAAGAAGCTTCTTCAGTATACTAGATATGCTTCGGTTGGGTTTGCTGTTGTACAGGCTATTGGGCAAGTTCTTTTTTTGCGTCCTTATGCGAATGATTTTACTACGGAGTGGGCGCTTACGTCTGTTATCTTGCTCACACTTGGATCTGTCTTTACGACGTACATTGGGGAACAAATTACTGAACTCAAACTCGGGAATGGTACCTCTCTTTTGATATTCACAAACATTATATCTTACTTGCCGGCTTCTTTTGGTCGCACGTTTTCACAGGCGTTTAGTGATGCTAACTATGTTGGACTTGTTACCATCATTGTCTCGTTCTTTCTGTTGGTACTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTATTAATTATGCTTCTAGATTCACCAGCAAAAGCGGTGGACTTGAAAAATCTGCTTACCTTCCTTTTAAGGTAAATAGTTCTGGGGTAATGCCTATCATTTTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCTCGCTTCACTGGTTTAAGCTCACTAAAAACTGCTGCAGTGGCTTTGAATCCAGGAGGCTCCTTCTATCTTCCATTTAACATATTTTTGATAGCCTTCTTCAACTACTATTATACTTTCCTACAACTGGATCCTGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAAAAGTACAGCTACATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACGCTTTTGGCAATCTTGGCTGCTGGACCTGCTGTTGTTGAGCAGTTCGCACACTTGACTGCATTCCGGGGATTTGCTGGAACATCTATTCTTATTCTGGTTGGCTGTGCGACAGACACAGCAAGAAAAGTTAGAGCTGAGATTATATCCCAGAAGTACAAAAACATAGAGTTATATGATTTTGATAAGTATTGA 1584 0.4255 MLITVTKASPSLRCPSLSLNNRRIPTKPKLSPRLLRSSSRQHNLSLRLRSSSSSNLSTSYDLANFDPLGINTDSSPTWKNLLTVFQASSEKDKPRGVAAAIEDSSIDFGDFFNGPLPGKFLKLLGFLALSRLGVYIPLGGVNRDAFLGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKLLQYTRYASVGFAVVQAIGQVLFLRPYANDFTTEWALTSVILLTLGSVFTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFSQAFSDANYVGLVTIIVSFFLLVLGIVYVQEAERKIPINYASRFTSKSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSSLKTAAVALNPGGSFYLPFNIFLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTATFIKTVLSRISVLGSTLLAILAAGPAVVEQFAHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFDKY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01440 527 ProSitePatterns Protein secY signature 1. 171 190 IPR030659 -
Vivi4g01440 527 FunFam Preprotein translocase subunit SECY, chloroplastic 111 516 - -
Vivi4g01440 527 MobiDBLite consensus disorder prediction 16 38 - -
Vivi4g01440 527 Gene3D SecY subunit domain 111 516 IPR023201 -
Vivi4g01440 527 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 112 519 IPR002208 GO:0015031|GO:0016020
Vivi4g01440 527 NCBIfam preprotein translocase subunit SecY 119 516 IPR002208 GO:0015031|GO:0016020
Vivi4g01440 527 SUPERFAMILY Preprotein translocase SecY subunit 113 510 IPR023201 -
Vivi4g01440 527 Pfam SecY 172 503 IPR002208 GO:0015031|GO:0016020
Vivi4g01440 527 ProSitePatterns Protein secY signature 2. 263 280 IPR030659 -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 455 473 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 244 269 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 120 138 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 361 380 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 400 422 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 489 507 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 212 235 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 270 293 - -
Vivi4g01440 527 PRINTS Preprotein translocase SecY subunit signature 170 190 - -
Vivi4g01440 527 Hamap Protein translocase subunit SecY [secY]. 108 520 IPR026593 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01440 39 527 Chloroplast and Mitochondria Gene Families AT2G18710 79.084 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01440 K10956 - gmx:100810430 791.956