Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01439 ATGGAATTGAAAAAGGGCAAGCTTGTCAGGTTTTACTCTGATGGGAAAAAGCACAAAGAACCATCAGGGCTTGAAGCCTCATCTTCCATATACAAGGTTTCATCATCTACCTTGCTTAAACCTAGTACCAATGTCCTTCCATTAGGTAAAAACAAAATAGGAGGATCTAAGGTGTTCCCCGAGGACCATGAGCCGTGGAGAAAAAGAATACTTGACCCGGGTAGCGCGATTGTCTTGAAATGGAATCGGGTTTTTATAGTTTCTTGCTTGGTAGCGCTTTTTCTTGATCCTCTATACTTTTATTTGCCTAGTGTTGCGGAAACTACAGTGTCTTCGTGTGTGAGGACTGATCTAACGTTACGGATTGTTGTCACTTTTCTTCGTACGATTGCGGATGCGTTTTATCTGTTGCATATTATGATTAAGTTCAGGACAGCGTATGTGGCACCGAGCTCACGGGTGTTTGGAAGGGGTGAACTTGTCATGGACCCAAAAAAAATTGCTAGGAGATACATCAGATCTGACTTCTTCATTGATTTTATTGCTACACTACCGCTACCACAGATGGTCATCTGGTTTATCATACCAGCTACAAGGACCCCTCAGACTGATCACAAGAATAACGCTCTTGCGTTGATTGTCTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCGTTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCTTGGGCTGGAGCTGCATATAATTTGCTATTGTACATGTTGGCTAGCCATGTTTTAGGGGCATCCTGGTATCTTCTGTCTGTTGACCGATATACTACTTGTTGGAAATCTTTATGCAAAAAGGAAGATAACCCTCATAATTGCTTTCTCTACCTAGACTGCACTTCTTTGAATAATGATAAGCGCAAGATATGGGCAAATAGTACAGATGTGTTTAGTAGCTGTGACCCCAACAATGATGGCATTCCGTTCAAGTATGGATTATTCGAAAATGCATTAACAAAGCATGTTGTATCTTCAAACTTCATATCAAAATACCTATATTGTTTATGGTGGGGGTTGCAGCAATTAAGTTCTTATGGACAAAACCTTGACACAACCACCTTTATTGGAGAGACATCATTTGCTATTGTAATTGCCATCTTGGGTCTTGTATTATTTGCACATTTGATTGGAAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAATGGAGGCTAAAACGAAGAGACACAGAGGAGTGGATGGGACATCGCCAACTCCCTGAAGATTTGAGATTTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCGACCCGTGGTGTTGATGAAGAAACCATTCTACGTTCATTGCCAACCGATCTTCGTCGTGATATCCAACGCCACCTATGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCGATATGTGAGCGGCTGGTATCTTCTCTAAGCACTCTAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGTTGTTTATTATTAGAGGCAGATTAGATAGTTCTACGACAAATGGTGGCCGGACAGGTTTCTTTAACTCAATTATATTGAGACCAGGAGATTTTTGCGGCGAGGAACTACTTTCTTGGGCACTACTTCCAAAATCAACCATGAATTTGCCGTCTTCAACCAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGAGCTGAAGACCTAAAGTTTGTCGCTAATCAATTTAGGCGCCTCCACAGCAAAAAGCTGCAGCACACTTTTCGATTTTACTCTCACCATTGGAGGACCTGGGCCGCCTGTTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGGATGTCTGCCAAAGATCTCGATTTGAAGGAATCCCTTCCTTTAGACGAGACAGAGGCCAGTGAGAGAGAACATGAAGAGGAATATCCTACTGCTTCAAACTCATCTCAGGCTAAAATGAATCTCGGGGTCACAATTCTTGCTTCTAGGTTTGCTGCTAACACGCGGAGAGGAGCACTAAAGATGAAAGATGACTTGCCTAAGCTACGGAAGCCTGAAGAACCCGACTTCACCACCGAAGCAGATGATGATTAG 2148 0.4209 MELKKGKLVRFYSDGKKHKEPSGLEASSSIYKVSSSTLLKPSTNVLPLGKNKIGGSKVFPEDHEPWRKRILDPGSAIVLKWNRVFIVSCLVALFLDPLYFYLPSVAETTVSSCVRTDLTLRIVVTFLRTIADAFYLLHIMIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRTPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSLCKKEDNPHNCFLYLDCTSLNNDKRKIWANSTDVFSSCDPNNDGIPFKYGLFENALTKHVVSSNFISKYLYCLWWGLQQLSSYGQNLDTTTFIGETSFAIVIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMGHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTMNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLDLKESLPLDETEASEREHEEEYPTASNSSQAKMNLGVTILASRFAANTRRGALKMKDDLPKLRKPEEPDFTTEADDD 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01439 715 Gene3D Jelly Rolls 477 597 IPR014710 -
Vivi4g01439 715 SUPERFAMILY Voltage-gated potassium channels 75 401 - -
Vivi4g01439 715 FunFam Cyclic nucleotide-gated ion channel 1 406 470 - -
Vivi4g01439 715 Pfam Ion transport protein 81 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi4g01439 715 CDD CAP_ED 479 610 IPR000595 -
Vivi4g01439 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 708 - -
Vivi4g01439 715 FunFam Cyclic nucleotide-gated ion channel 1 477 595 - -
Vivi4g01439 715 MobiDBLite consensus disorder prediction 644 661 - -
Vivi4g01439 715 MobiDBLite consensus disorder prediction 644 666 - -
Vivi4g01439 715 Gene3D - 84 404 - -
Vivi4g01439 715 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g01439 715 PRINTS EAG/ELK/ERG potassium channel family signature 374 385 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g01439 715 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g01439 715 PRINTS EAG/ELK/ERG potassium channel family signature 442 449 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g01439 715 PRINTS EAG/ELK/ERG potassium channel family signature 392 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g01439 715 ProSiteProfiles cAMP/cGMP binding motif profile. 479 609 IPR000595 -
Vivi4g01439 715 SUPERFAMILY cAMP-binding domain-like 409 601 IPR018490 -
Vivi4g01439 715 SMART cnmp_10 479 610 IPR000595 -
Vivi4g01439 715 MobiDBLite consensus disorder prediction 693 708 - -
Vivi4g01439 715 Pfam Cyclic nucleotide-binding domain 503 590 IPR000595 -
Vivi4g01439 715 Gene3D Helix hairpin bin 407 470 - -
Vivi4g01439 715 MobiDBLite consensus disorder prediction 693 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01439 Vivi-Chr4 53344206 53350126 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01439 1 714 Ion Channels AT4G30360 70.954 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01439 K05391 - gmx:100808425 1265.37