Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01436 ATGAAGGAGAAGAGAGTTAGTAATATTTACATGTTGGATGACTTGGACTCTAGATTGTCCTCATCTTCTGATGCTGGAGTTAAAACATTTAGTATTGATAAATTAAGCCATGGTGCCCATGGAACCACTAAAACCTCAAGATCTTTCAAACGAGGAATGAGAAAAGGATCTGAAGGACTGAAGTCAATTGGCCGATCATTTGGATTTGGGGTATCTAAGGTTGTGTTCCCAGAAGATCTTCAAGTTTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTCTTACTCTTCTGGAATAAGCTTTTTGTTGTCTCTTGTATTTTGGCTGTGTCTGTGGATCCGCTGTTTTTTTATCTCCCTGTCATCAATGATTCGTTACGCTGTCTTGGTATAGACCGAAAGTTGGCAGTTATAGTTACCACCTTGAGGACATTTATTGATGCATTCTATCTAATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGAGGTGAGCTTGTGATAGATCCGGCACAGATAGCAAAGCGATACTTACGGCGGTATTTCATCATTGATTTCTTATCAGTATTGCCCTTACCACAGATTGTGGTGTGGAGATTTCTTCAGAGTTCAAAAGGTTCAGATGTAGTCACAACAAAGCAGGCCTTACTTTTCATTATTTTACTTCAGTACATTCCAAGATTTCTCCGGATGGTACCATTGACTTCTGAACTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTATTATTCATGCTCGCCAGTCATATAGTTGGGTCGTTTTGGTACTTATTAGCTGTTGAGCGCAACGACTTTTGCTGGAAGAAGGCTTGTAGTGACAATGGGTACAACAAGAAATTCTTGTACTGTGGCAACCAATACATGGAAGGTTATAGTTCCTGGCAGAATAAAAGTGAAGCTATTCTTACATCACAGTGCTCTACAGATAATGATAATCCACCTTTTGACTATGGGATATTTACACAAGCCTTGAAGTCTGGCATTGTTTCATCTAACAAGTTCTTGTCCAAGTACTGTTACTGTTTATGGTGGGGGCTTCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTACGTTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATTCTCTTTGCACTTCTGATCGGTAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAGCGACGTGATTCAGAACAGTGGATGCATCATCGTCTGCTCCCACAAGAGCTTAGAGAGCGCGTGAGACGATATGATCAATATAAGTGGTTGGCGACACGTGGTGTAAACGAAGAAAATTTGGTTCAGAGTCTTCCAAAGGATCTTCAAAGAGATATTAAGCGTCACCTTTGTCTGGCTTTAGTTAGAAGGGTTCCATTATTTGAGAGTATGGATGAGAGATTGCTGGATGCCATATGTGAGAGACTGAAGCCAAGTTTATTTACAGAGAGTACTTACATTGTGCGGGAAGGAGATCCGGTTGATGAGATGCTTTTCATCATACGCGGTCGGCTCGAGAGTGTCACTACAGACGGTGGGAGGAGTGGATTTTTTAATCGCAGTTTTCTGAAAGAGGCAGACTTCTGTGGCGAGGAGCTTTTAACTTGGGCGCTTGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAATGGAAGTTGAGGCTTTTGCATTAACTGCTGAAGAGTTGAAGTTTGTCGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGAACTTGGGCTGCATGCTTTATTCAAGCAGCTTGGCGCAGGTATTCCAAACGAAAAATTACGGAGCTTCGTCGAAAGGAAGAACCTGAGGAGTCAGAACGAACTCGCAGCAATGCTGGTGGCAGTTCATACAGTCTCGGTGCCACGTTATTGGCCTCAAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATCGTATTGCTAAGAGTCCCGAGAACATGGTGAAATTACAGAAACCTTCTGAGCCCGACTTCACTGCTGATGATATGTAA 2163 0.4253 MKEKRVSNIYMLDDLDSRLSSSSDAGVKTFSIDKLSHGAHGTTKTSRSFKRGMRKGSEGLKSIGRSFGFGVSKVVFPEDLQVSEKKIFDPQDKFLLFWNKLFVVSCILAVSVDPLFFYLPVINDSLRCLGIDRKLAVIVTTLRTFIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQSSKGSDVVTTKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWKKACSDNGYNKKFLYCGNQYMEGYSSWQNKSEAILTSQCSTDNDNPPFDYGIFTQALKSGIVSSNKFLSKYCYCLWWGLQNLSTLGQGLQTSTYVGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVNEENLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPSLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKITELRRKEEPEESERTRSNAGGSSYSLGATLLASRFAANALRGVHRNRIAKSPENMVKLQKPSEPDFTADDM 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01436 720 FunFam Cyclic nucleotide-gated ion channel 1 492 610 - -
Vivi4g01436 720 Pfam Ion transport protein 97 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi4g01436 720 Gene3D - 100 419 - -
Vivi4g01436 720 MobiDBLite consensus disorder prediction 700 720 - -
Vivi4g01436 720 SUPERFAMILY cAMP-binding domain-like 423 614 IPR018490 -
Vivi4g01436 720 SMART cnmp_10 494 625 IPR000595 -
Vivi4g01436 720 Pfam Cyclic nucleotide-binding domain 516 604 IPR000595 -
Vivi4g01436 720 ProSiteProfiles IQ motif profile. 630 659 IPR000048 GO:0005515
Vivi4g01436 720 CDD CAP_ED 494 625 IPR000595 -
Vivi4g01436 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 79 715 - -
Vivi4g01436 720 Gene3D Jelly Rolls 492 612 IPR014710 -
Vivi4g01436 720 FunFam Cyclic nucleotide-gated ion channel 1 421 485 - -
Vivi4g01436 720 SUPERFAMILY Voltage-gated potassium channels 89 416 - -
Vivi4g01436 720 ProSiteProfiles cAMP/cGMP binding motif profile. 494 578 IPR000595 -
Vivi4g01436 720 Gene3D Helix hairpin bin 422 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01436 Vivi-Chr4 53240183 53255193 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01436 18 718 Ion Channels AT5G57940 78.045 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01436 K05391 - gmx:100820202 1260.74