Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01412 ATGAAATCTTACATGCTCACGTTGTTGCTGTTTGCGTTCCTGTACTTAGGAGTGAACTCAACCACTCTTAACGATGATATGATAACTACGCTACCTGATCAGCCATGGGTGAATTTCACCCAGTATGCTGGATACCTGACGGTTGATGAAAACAACCTTAAAAATTTATTCTATTACTTCGTGGAGGCTGAAGTTGATCCGGCCTCCAAGCCAGTGGTTCTATGGATTAATGGAGGACCCATATGCTCTACATATGGAGGGGGAGCTTTCACCGAGAACGGGCCTTTCAGGCCCACAAGTACTGGTCGACTTGTAAAAAATCCATACAGTTGGAACATAGAGGCCAATATGTTGTATTTGGACTCTCCCGCTGGATTTGGATTTTCCTACTCGGAAGATCCTTCTGATTATTTTACGAATGATAAGTTTACCGTTTTTCTCCAAAACTGGTTCAACAAATTCCCTCAGTACAGAACCAATGATTTCTTCATCACGGGGGAGAACTATGCAGGACACTATGCACCGCAACTTGCAGAGCTTATCCTCCAATCTAGAGTGAATATCAATCTGAAAGGGATAGCCATAGGAAATCCCCTTCTTGAATTTGATACCGACTTAAACTCGGCTATTGAATTCTTGAGTTTGAAAGGACAAATATCAGAAGAAACATATGAAATGTTGAATACTGAATGCAACATGGCAACCTTAAAGAGACAATTTCAATCAGGGAATTTTAGTACCAGTTGTTCGAAAGTGAACTTTGAATTGTCAAAGGATCGGGCATATACGGACCCTTTTGACGTGTATGCTGATATTTGTCTACCTCCAACCGAACGACAAGCATACATGTTGACTGAACAGCAAGCTGGAGACATAGATGTATGTGTGGGAGAACAAACTGCCACATACATGAATAGAATGGATGTGCAAAATGCTATGCATGCCAAGCTTGTGGGTGTCAAAAGTTGGTCATCATGCAGCGGTGTTGTTGTGTATGACATTCAAAGCCTCGAGAATTCAACCATATCTATACTAGGGACACTTGTTAAGTCAGGTGTGAGGGTACTAGTATACAGTGGTAATCCGGATTCTGTGATTCCATTTTTGGGGACACGGTCTTTAATAAATCATTTGGCCGAGGATTTTGGATTTATAACAACAAAGCCCTTTAAAGCCTGGCTTGTGGGAGGAGAGGATGCTGGATGGACTATGGAGTATGAGGATATTCTCACATACGCAACTGTCAACGGAGCGGGTCATTCGGTTCCTTTTTCTCAGCCAGAGATAGCTTTGAAGATGATTCAGACTTTTCTTAAAGGAAAATCACTTCAAAATGAACTGTCAAATAACCAAGCAATCTAA 1362 0.4156 MKSYMLTLLLFAFLYLGVNSTTLNDDMITTLPDQPWVNFTQYAGYLTVDENNLKNLFYYFVEAEVDPASKPVVLWINGGPICSTYGGGAFTENGPFRPTSTGRLVKNPYSWNIEANMLYLDSPAGFGFSYSEDPSDYFTNDKFTVFLQNWFNKFPQYRTNDFFITGENYAGHYAPQLAELILQSRVNINLKGIAIGNPLLEFDTDLNSAIEFLSLKGQISEETYEMLNTECNMATLKRQFQSGNFSTSCSKVNFELSKDRAYTDPFDVYADICLPPTERQAYMLTEQQAGDIDVCVGEQTATYMNRMDVQNAMHAKLVGVKSWSSCSGVVVYDIQSLENSTISILGTLVKSGVRVLVYSGNPDSVIPFLGTRSLINHLAEDFGFITTKPFKAWLVGGEDAGWTMEYEDILTYATVNGAGHSVPFSQPEIALKMIQTFLKGKSLQNELSNNQAI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01412 453 ProSitePatterns Serine carboxypeptidases, histidine active site. 410 427 IPR033124 GO:0004185
Vivi4g01412 453 Gene3D alpha/beta hydrolase 21 444 IPR029058 -
Vivi4g01412 453 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 427 IPR001563 GO:0004185|GO:0006508
Vivi4g01412 453 SUPERFAMILY alpha/beta-Hydrolases 29 442 IPR029058 -
Vivi4g01412 453 Pfam Serine carboxypeptidase 34 440 IPR001563 GO:0004185|GO:0006508
Vivi4g01412 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 130 IPR001563 GO:0004185|GO:0006508
Vivi4g01412 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 175 IPR001563 GO:0004185|GO:0006508
Vivi4g01412 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 410 423 IPR001563 GO:0004185|GO:0006508
Vivi4g01412 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 107 119 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01412 Vivi-Chr4 51809270 51817463 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01412 303 443 Calmodulin-binding Proteins AT2G22960 26.950 2.44e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01412 K16297 - gmx:100805028 504.597