Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01397 ATGGATGAGATATCGTCTTCCACAAATGTCACTCAAGATGTTGGTTCAATCTCCGATGAAAATAAAGAATCGTGGCAACATTTTGTCTTCCACGAGCTTTCATCAATCAAGGATTTCTATGCTAAATACGCTCATGAAAAGGGATTTAGCGTGAGAAGAAATTTGCACTCCTTCTATGATTCTCGTAACAAAAAAACGGACATTGTGCAATATATCCGTTATGTTTGTAACAAGCATGGTTTCAAGCACGGAAGTCGGGCGGATCCTAAGAACAAGACAAACTCGGATACTCCTGTTCTCATTGAATATCAGAAAGAGAAAGAACTTCCCGAGGAAAGGACTGGTTGCCCAGCTAGTATTTCGTTGAAGTATGATTCCAATGTTAAAGGTTATCACATATACAAATGGAATGTTACTCATAACCACCCTCTCCATAAACCCGAGCATTCGCATTACTTGAGATCGGCTCGAGAGATTAGTGAGCCTCAAAAACAACTTGCTATAATAAATTCAAAATCAGGCATGTCTGTAAGATCCTCCTTTCAAGTTATGCGTCAAATAGCTGGTGGTTCAAAGAACCTTGGGTATTGCTTCCAAGATTTAAAGAACTTTCTCACCACTGTTCGACAAAAGGAAATGGTCATTGGTGATGCAACTATTATCCAAGAATATCTTAGAAACGAAGCTTTGAGGAACCCGTCATTTTATTATGATATCCAAGTAGATTCTGAAGAGAACATAGCTAGTATTTTCTGGTCAGATGCAATCATGCAGCAAGACTATGAATTATTTGGTGATCTCATCAGTTTCGACACTACTTATCGAACAAATACGGAGTATCGCCCATTAGCTCCGTTCCTTGGATTTGACAACCACCGTAAGAGTGTATTATTTGGTTGTGCCCTGCTCTACGATGAGACTTCAGCAAGTTTTTATTGGTTGTTTACCACTTTCCTGAAGTGCATGAAAAATAAGAAACCCATTACAATTTATACAGACCAAGCTTCTGCTTTGATGAAGTCAGTTCCAAACATCTTCCCCGATGTCTTCCATGGGTTGTGTTCTTGGCACATGGGGGAGAATGCAAAGTCCAACTTAGGCTCTCGTTGCAATGGTGCATTTCTTGACGAACTACATCACTTGGTTTCGAATGTTGATGATGAGGCAGAGTTTGACTTCAATTGGAATAAGATGCTTCAAAATTGTTTTGGTGGTAAAGCCACTTCTGAATTTACTTGGCTTGTACAGATTCATCGTAATCGTACTCAATGGTCTTCTGCTTTGGTGAAATCACACTTCACTGCCGGTTTGAAGACCACACAGTTAAGCGAGTCGTTCAATGCCTTTCTTCGCCACTTTCTTCAGCCAGACCACTCACTTGTGCAATTCTTTATCCATTTCAATGTTATGGTTGAGAAAATGCGAGATAATCATGCTGATTGTGATTTCAAGGCTGCCAATACTAGGCCAAGAAACAATTATCCCAACAGCCAACTCATGAGGTCCGTTGTCGCCAAGTATACTCCAGCATCGTTTGCATTCATTCACAAGCAATATGATCTTTCTTTCAAATATTATTATGAGGAGGTCACGTCAAGAAGTTCAATTTCTAATAGAGTTTTCAAAGTGTTCACAATTCAACTTGTTCGTGATGCCGATGAGATGGATTTTGATAATGATGCCACTGCGAATGTTTATATGTCGGTCGAAGAAGTTCCAGAAAACTTTCTTCCTAATGATCAAGATCCTTTGTGA 1755 0.3954 MDEISSSTNVTQDVGSISDENKESWQHFVFHELSSIKDFYAKYAHEKGFSVRRNLHSFYDSRNKKTDIVQYIRYVCNKHGFKHGSRADPKNKTNSDTPVLIEYQKEKELPEERTGCPASISLKYDSNVKGYHIYKWNVTHNHPLHKPEHSHYLRSAREISEPQKQLAIINSKSGMSVRSSFQVMRQIAGGSKNLGYCFQDLKNFLTTVRQKEMVIGDATIIQEYLRNEALRNPSFYYDIQVDSEENIASIFWSDAIMQQDYELFGDLISFDTTYRTNTEYRPLAPFLGFDNHRKSVLFGCALLYDETSASFYWLFTTFLKCMKNKKPITIYTDQASALMKSVPNIFPDVFHGLCSWHMGENAKSNLGSRCNGAFLDELHHLVSNVDDEAEFDFNWNKMLQNCFGGKATSEFTWLVQIHRNRTQWSSALVKSHFTAGLKTTQLSESFNAFLRHFLQPDHSLVQFFIHFNVMVEKMRDNHADCDFKAANTRPRNNYPNSQLMRSVVAKYTPASFAFIHKQYDLSFKYYYEEVTSRSSISNRVFKVFTIQLVRDADEMDFDNDATANVYMSVEEVPENFLPNDQDPL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01397 584 Pfam MULE transposase domain 268 359 IPR018289 -
Vivi4g01397 584 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 533 IPR031052 GO:0006355
Vivi4g01397 584 Pfam FAR1 DNA-binding domain 38 145 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01397 Vivi-Chr4 51041986 51044632 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi4g01397 FAR1 2.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01397 - - vvo:131652168 1054.66