Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01355 ATGCCGAGAGTTTCAGAAAAGACCAAGGAGAGTGCAGGAGAACCATGGGTATTCTTGGGTCTCCTACCCCTCTTTGACCCTCCAAGGCATGACAGTGCCGAGACAATTCGCCGCGCTCTTGACCTCGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGAATAGAAAACGGCCGCAGACTTGGAATGGGAACCAACATGTACCCTTCATCCTCCCTTCTTGGCCAATGCAAGGATGCATCTATTGCAACAATTCCAATTGATGAGCTCATTGAGAAGGCTGATGGATTTGCTGGAGTCTTCCCTGAGCACAAGTACGAGATTGTCAAGAGGTTACAGGATAGGAAGCACATTTGTGGTATGACCGGAGATGGTGTGAACGATGCACCGGCGTTGAAGAAGGCAGACATTGGTATTGCAGTCGCTGATGCAACTGATGCCGCAAGGAGTGCCTCAGACATTGTCTTGACAGAGCCAGGATTGAGTGTGATCGTGAGTGCTGTGCTGACAAGTAGGGCCATCTTCCAAAGGATGAAGAACTACACAATCTATGCAGTTTCCATCACAATCCGTATCGTTCTTGGGTTCTTGCTCATTGCTCTAATATGGCAGTTTGACTTTTCTCCTTTCATGGTTTTGATCATCGCCATTTTGAATGACGGAACCATCATGACCATCTCCAAGGACAGGGTGAAGCCATCTCCTGTTCCTGACTCATGGAAGCTTATCCGCATCCTCAAGTTTCTTATCCGCATGGGACTCACAGGCAGTGCCTGGGACAACATGCTCCAAAACAAGACTGCATTTACAACAAAGAAGGACTACGGGAAAGATGAGAGGGAGGCTCAGTGGGCAACGGCTCAACGCACAATGCACGGCCTTCAATCCCACGAGGCCCCGAAGCACGGTCACCACCATGACCACTCTGAAATGGCTGAACAAGCTAAGAGACGTGCTGAGAATGCTAGGCTAAGAGAGCTACACACACTCAAGGGACACGTTGAATCAGTTGTCAAGTTGAAGGGTCTTGACGTTGAAACCATGCAACAACACTACACAGTCTAA 1074 0.487 MPRVSEKTKESAGEPWVFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGIENGRRLGMGTNMYPSSSLLGQCKDASIATIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIALIWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLIRILKFLIRMGLTGSAWDNMLQNKTAFTTKKDYGKDEREAQWATAQRTMHGLQSHEAPKHGHHHDHSEMAEQAKRRAENARLRELHTLKGHVESVVKLKGLDVETMQQHYTV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01355 357 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 262 IPR023298 -
Vivi4g01355 357 MobiDBLite consensus disorder prediction 289 320 - -
Vivi4g01355 357 PRINTS P-type cation-transporting ATPase superfamily signature 42 52 - -
Vivi4g01355 357 PRINTS P-type cation-transporting ATPase superfamily signature 20 31 - -
Vivi4g01355 357 PRINTS P-type cation-transporting ATPase superfamily signature 125 144 - -
Vivi4g01355 357 PRINTS P-type cation-transporting ATPase superfamily signature 148 160 - -
Vivi4g01355 357 FunFam Plasma membrane ATPase 19 173 - -
Vivi4g01355 357 MobiDBLite consensus disorder prediction 298 320 - -
Vivi4g01355 357 Coils Coil 308 328 - -
Vivi4g01355 357 Gene3D - 26 162 IPR023214 -
Vivi4g01355 357 SUPERFAMILY HAD-like 17 171 IPR036412 -
Vivi4g01355 357 Gene3D - 163 266 - -
Vivi4g01355 357 PANTHER CALCIUM-TRANSPORTING ATPASE 10 256 - -
Vivi4g01355 357 NCBIfam HAD-IC family P-type ATPase 100 214 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g01355 357 Pfam haloacid dehalogenase-like hydrolase 19 139 - -
Vivi4g01355 357 Gene3D - 307 357 - -
Vivi4g01355 357 Gene3D - 4 25 IPR023299 GO:0000166
Vivi4g01355 357 PRINTS H+-transporting ATPase (proton pump) signature 156 181 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g01355 357 PRINTS H+-transporting ATPase (proton pump) signature 97 113 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g01355 357 PRINTS H+-transporting ATPase (proton pump) signature 125 141 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01355 Vivi-Chr4 47291918 47294044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01355 248 357 Primary Pumps ATPases AT3G42640 75.455 1.52e-48 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01355 K01535 - vvo:131597162 692.96