Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01341 ATGGCAGGAATGCTCCCTGGTGTTGAATCTGCTAGAAGGAGACGTGTCCATAAGGCTGGAGTTGAACCTTCTAATAACAGACGCTCTTCTTTCTGTTTGTATTCCAGTAATTCTGAATCTCGTCTTTCCTCATCTTCTTCAATGCAAAGAAACATATTATACCAGACACAGCAAGATGAGAATATGGTAGGAGCAGCAAGAGAAGCTAAACAAAGATTGGATGACAAATTCAGATCACCAAGAGTATTAGAAAACACAAGGAAGAAGAGCATAAAGTGTGTGGAGGGCAGAAAAGATAGCATAGAGGAGTTACAAATTGAGGTGTATGGTTCAAAGAAAAGTGGGCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCAACAGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGAGAAATTGATTCCTCTACCTTGTGCTCACAAGTTTCATTCTACATGTTTGAAACCTTGGTTGGAAAATAACTCACACTGTCCATGTTGTAGAACTACCATTCTTTTTCTCTAG 546 0.3974 MAGMLPGVESARRRRVHKAGVEPSNNRRSSFCLYSSNSESRLSSSSSMQRNILYQTQQDENMVGAAREAKQRLDDKFRSPRVLENTRKKSIKCVEGRKDSIEELQIEVYGSKKSGPRKFSWSKLSWKATEQEDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILFL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01341 181 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Vivi4g01341 181 SUPERFAMILY RING/U-box 123 180 - -
Vivi4g01341 181 Pfam Ring finger domain 133 175 IPR001841 -
Vivi4g01341 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 179 IPR013083 -
Vivi4g01341 181 FunFam Zinc finger family protein 108 179 - -
Vivi4g01341 181 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 40 176 - -
Vivi4g01341 181 SMART ring_2 134 174 IPR001841 -
Vivi4g01341 181 MobiDBLite consensus disorder prediction 1 30 - -
Vivi4g01341 181 CDD RING-H2_PA-TM-RING 133 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01341 Vivi-Chr4 45866999 45868143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01341 43 178 C3H Transcription Factor Family AT1G49850 29.936 4.41e-17 74.7