Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01340 ATGGCAGGAATGCTCCCTGGTGTTGAATCTGCTAGAAGGAGACGTGTCCATAAGGCTGGAGTTGAACCTTCTAATAACAGACGCTCTTCTTTCTGTTTGTATTCCAGTAATTCTGAATCTCGTCTTTCCTCATCTTCTTCAATGACACAGCAAGATGAGAATATGGTAGGAGCAGCAAGAGAAGCTAAACAAAGATTGGATGACAAATTCAGATCACCAAGAGTATTAGAAAACACAAGGAAGAAGAGCATAAAGTGTGTGGAGGGCAGAAAAGATAGCATAGAGGAGTTACAAATTGAGGTGTATGGTTCAAAGAAAAGTGGGCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCAACAGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGAGAAATTGATTCCTCTACCTTGTGCTCACAAGTTTCATTCTACATGTTTGAAACCTTGGTTGGAAAATAACTCACACTGTCCATGTTGTAGAACTACCATTCTTTTTCTCTAG 525 0.4019 MAGMLPGVESARRRRVHKAGVEPSNNRRSSFCLYSSNSESRLSSSSSMTQQDENMVGAAREAKQRLDDKFRSPRVLENTRKKSIKCVEGRKDSIEELQIEVYGSKKSGPRKFSWSKLSWKATEQEDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILFL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01340 174 MobiDBLite consensus disorder prediction 1 26 - -
Vivi4g01340 174 MobiDBLite consensus disorder prediction 40 64 - -
Vivi4g01340 174 ProSiteProfiles Zinc finger RING-type profile. 127 168 IPR001841 -
Vivi4g01340 174 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 30 169 - -
Vivi4g01340 174 CDD RING-H2_PA-TM-RING 126 168 - -
Vivi4g01340 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 172 IPR013083 -
Vivi4g01340 174 Pfam Ring finger domain 126 168 IPR001841 -
Vivi4g01340 174 SUPERFAMILY RING/U-box 116 173 - -
Vivi4g01340 174 MobiDBLite consensus disorder prediction 40 54 - -
Vivi4g01340 174 SMART ring_2 127 167 IPR001841 -
Vivi4g01340 174 FunFam Zinc finger family protein 101 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01340 Vivi-Chr4 45866999 45868147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01340 35 171 C3H Transcription Factor Family AT1G49850 31.013 4.60e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01340 - - vvo:131599132 335.495