Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01324 ATGTCTACAATTCACTTTTTGATCCTTTTCTTTCTAAGCTTTCTGATCTCTTCTCCGGGTGTAGCAGTTACCGATAAGGTAACTGACTTACCCGGACAACCGCCGGTGAATTTTTCACAACATGCCGGTTACATCACCGTAGATGTAGCCCATGACAGACGGCTCTTCTACTACTTCGTAGAAGCCAGCGTTGAGCCAGCATCAAAACCAGTGGTGCTCTGGTTACACGGTGGGCCCGGTTGTTCTGCTGTGGGAGGAGCAGCATTCTCACAGCATGGACCTTTTCTCATCTCTGGCGAGGGTCTCATAAAAAATCCATACAGCTGGAATACAGAAGCAAATATGCTGTATTTGGATTCTCCAGCTGGCGTCGGTTTCTCTTATTCGAGAAACACTTCCGACTACTTATTTTTGAATGATGACTTTGCAGCAAGGGATCACCTTGTTTTTTTGCAGCATTGGTTCAATAAATTCCCCAATTTTAGAACCAACAACTTTTTTATAGCTGGGGAGAGTTATGCAGGACACTTTGCTCCTCAACTTGCTCTCCTCATCCTTCAGACCAAATCTGAATTCAATCTGAAGGGGATATCCATAGGGAATCCTCTTCTAGATTTTGACACGGATTTCACCGCCTCAACTGACTATTTATGGCAGCGTGGAGTAATTTCCGACTCAACATATGAGTTGTTGAGCAACAACTGCAGCTATGTTGACATAAAGAAACAGTTGAGAGCAACAAATGTATTAAATGCCACATGTTTTGACATTCTCCTTCAAATGGAATTAGAGGTAAATGCCAACTTAGACGTGTTTGACATTTCAAATGATGTTTGTCCAACACAAAAGTTGGCCATAGAGCAACTCGGCGTGAAGAGAAACATATGCATTGTACAACAGTCGATTGAATTCTTCAATAGGAAGGATGTACAACAAGCTCTTCACGGCGAGCTTGTAGGGGTCAAGGATTGGACAACCTGCAGCGCGAATCTTGTGTATAACTACACAAATCTTGAAAATCCAGCCTTATATATGCTTGGGACACTTGTTAAAGCAGGTGTTAGAGTGCTGGCATATTGTGGCGACGAGGATTCAGTCATACCGTGTACTGGGACACGACCTTTGATAAAAGGTTTGGCTAAGGATTTGGGATTGACCATCACAAGACACCATGAAGCATGGTTTAAGGGTGACAAGATTGCTGGATGGACCCAAGTATATGGGGACATTCTGACTTTTGCAACTGTAAGAGGGGCGGGTCATTCCACGCCAATAGCTCAACCGGAGAGATCATTGGAAATGATGAAAGCTTTCTGGAAAGGGAAGCCCCTACCAAAAAAATCACACTAA 1350 0.4356 MSTIHFLILFFLSFLISSPGVAVTDKVTDLPGQPPVNFSQHAGYITVDVAHDRRLFYYFVEASVEPASKPVVLWLHGGPGCSAVGGAAFSQHGPFLISGEGLIKNPYSWNTEANMLYLDSPAGVGFSYSRNTSDYLFLNDDFAARDHLVFLQHWFNKFPNFRTNNFFIAGESYAGHFAPQLALLILQTKSEFNLKGISIGNPLLDFDTDFTASTDYLWQRGVISDSTYELLSNNCSYVDIKKQLRATNVLNATCFDILLQMELEVNANLDVFDISNDVCPTQKLAIEQLGVKRNICIVQQSIEFFNRKDVQQALHGELVGVKDWTTCSANLVYNYTNLENPALYMLGTLVKAGVRVLAYCGDEDSVIPCTGTRPLIKGLAKDLGLTITRHHEAWFKGDKIAGWTQVYGDILTFATVRGAGHSTPIAQPERSLEMMKAFWKGKPLPKKSH 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01324 449 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 428 IPR001563 GO:0004185|GO:0006508
Vivi4g01324 449 Gene3D alpha/beta hydrolase 21 445 IPR029058 -
Vivi4g01324 449 Pfam Serine carboxypeptidase 31 440 IPR001563 GO:0004185|GO:0006508
Vivi4g01324 449 ProSitePatterns Serine carboxypeptidases, serine active site. 168 175 IPR018202 GO:0004185
Vivi4g01324 449 FunFam Carboxypeptidase 21 281 - -
Vivi4g01324 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 128 IPR001563 GO:0004185|GO:0006508
Vivi4g01324 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 105 117 IPR001563 GO:0004185|GO:0006508
Vivi4g01324 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
Vivi4g01324 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 411 424 IPR001563 GO:0004185|GO:0006508
Vivi4g01324 449 SUPERFAMILY alpha/beta-Hydrolases 27 445 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01324 Vivi-Chr4 45290172 45293840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01324 306 444 Calmodulin-binding Proteins AT2G22960 28.777 6.81e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01324 K16297 - gmx:100805028 521.931