Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01311 ATGGTTGTGGAGAATCAAAGGGGTCATTTGAGGGATGAAGATGGGGTCATTGACCGTTTTCCTGTCGGTATGCGTGTTCTTGCTGTTGATGACAACCCTACTTGTCTTATGGTTTTGGACAAACTCCTTCGTCAATGCAAATATCATGTTACTACTTCTACAAATGCAATTGATGCGCTGAAGATGTTGAGGAGAAACAAAAATAACTTTGACTTGGTTATTAGTGATGTGGATATGCCTGACATGGATGGGTTTAAGCTTCTTGAGTTGGTGGGACTTGAAATGGACTTACCTGTAATCATGTTGTCGGGACACAGTGACACAAATATGGTGTTCAAAGGGATTACACACGGTGCATGTGACTATCTGCTGAAACCTGTTCGACTTGAAGAGCTCAAGAACATATGGCAACATGTTGTTCGAAAGAAGAAAACCGGTTCCAATTATGAAAATAAGGCTTCCGATGAGGATAGGGTTGCTAATATTTCGGGGGGAAATAGTCAAAACATATTGGAAAACAATGGTGATCAGAATAAAAGGATCGGTAAAATAAGGAAGGACCGAGATGAGGAGGGAGAAGAAGACGAAGAAGGTGAAGAGGAAGGGGAAGGGATTGGAGATGAGGATGACCCATCCTCACAGAAGAAACCACGCGTGGTTTGGTCTATTGATCTACATCAGAAATTTGTCGGTGCTGTTAACCATCTCGGCTTCGAAAAGGCTGTTCCGAAGAAAATACTTGATTTGATGAATGTTGAAGGGCTCACTAGGGAAAATGTGGCAAGCCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCAGCCCATCAAGCTAACATGGTTGCGGCATTCGGTGGTGGTAACGATTCATATCTTCGGATGAGTGGAATAGATGGATATGCAGATTTTTGCACATCGGCTGGATCTAGAAGGATCTCGAGTACCACCTTGCCATCATCATATTCGTCCAGTGGACTTTTCGGTAGGCTGAATTCTCCAGCCAGCTTTAACATGAGAGGTATTAGTCCTTCAACACTGATTCGGCCTGTTCAGAGTCAAAACATCGACAGCTCGTTGAGCAAACTCGGAAACCTCCAGTCATCATCCATGGTATTTCCCGCAAATCAAAGCTCAAGCCTATTGCACAGTATTCCAACTGAGCTTAACCCAGTAGATTCCACTGGATTTGGAGTTGCATCCCGATTCCAGGATAGTAGGGGTACTAACTGTTCTCTACAAGTCTCAAACCATCATTTATTGTTCCAAGGAAATTCACGACCGACACACAATGCAGGGACATATAGAAATCAGTCTTCTCTTGGTTCTGCATCTTTGGGAAACACAAACATCGGCATTTGTAGTTCTTCTAATCTGTTGGGTTATAATCAGTGTACTGAAAACTTCGAAAGTGAACCGTTGCCTAATTTTCCTGCCAGTTCTTTGCCGGTATGCGGGTCTTTCAATACCGACCAAATGCCTCCAACTAGCATTACTGCTTTCAACCAAATATCTCCGATAGATAATTGTCCCGTTAACTTTTCATCTGGAGAAGCAATCAATGCTACTTTGAAGGATGCGAGAGATGTTTTGACGAGGTACCAAGAAGGCGGCTTTATTCGGAATACTATGCAGCCTTCTGGTTATGCCCCGCGACAAAGGTGGGAAGAACATAAACTGGATTACAGCGAAAACATGAGCCGGCCCTTCATAACGCAAGAGCAAAACGACATGACATTAATGGATGGAGAAATGGGATTTCACGATGCTTACCCTATTGGATCATGTATTTGA 1791 0.431 MVVENQRGHLRDEDGVIDRFPVGMRVLAVDDNPTCLMVLDKLLRQCKYHVTTSTNAIDALKMLRRNKNNFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSGHSDTNMVFKGITHGACDYLLKPVRLEELKNIWQHVVRKKKTGSNYENKASDEDRVANISGGNSQNILENNGDQNKRIGKIRKDRDEEGEEDEEGEEEGEGIGDEDDPSSQKKPRVVWSIDLHQKFVGAVNHLGFEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAHQANMVAAFGGGNDSYLRMSGIDGYADFCTSAGSRRISSTTLPSSYSSSGLFGRLNSPASFNMRGISPSTLIRPVQSQNIDSSLSKLGNLQSSSMVFPANQSSSLLHSIPTELNPVDSTGFGVASRFQDSRGTNCSLQVSNHHLLFQGNSRPTHNAGTYRNQSSLGSASLGNTNIGICSSSNLLGYNQCTENFESEPLPNFPASSLPVCGSFNTDQMPPTSITAFNQISPIDNCPVNFSSGEAINATLKDARDVLTRYQEGGFIRNTMQPSGYAPRQRWEEHKLDYSENMSRPFITQEQNDMTLMDGEMGFHDAYPIGSCI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01311 596 PIRSF RR_ARR_type-B 3 595 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi4g01311 596 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 269 IPR006447 GO:0003677
Vivi4g01311 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 272 IPR017930 -
Vivi4g01311 596 FunFam Two-component response regulator 212 275 - -
Vivi4g01311 596 SUPERFAMILY CheY-like 23 145 IPR011006 -
Vivi4g01311 596 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vivi4g01311 596 SUPERFAMILY Homeodomain-like 214 273 IPR009057 -
Vivi4g01311 596 Gene3D - 212 274 - -
Vivi4g01311 596 SMART REC_2 24 136 IPR001789 GO:0000160
Vivi4g01311 596 MobiDBLite consensus disorder prediction 146 217 - -
Vivi4g01311 596 CDD REC_typeB_ARR-like 26 140 - -
Vivi4g01311 596 MobiDBLite consensus disorder prediction 160 176 - -
Vivi4g01311 596 Gene3D - 24 201 - -
Vivi4g01311 596 Pfam Myb-like DNA-binding domain 218 268 IPR001005 -
Vivi4g01311 596 MobiDBLite consensus disorder prediction 191 207 - -
Vivi4g01311 596 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Vivi4g01311 596 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 364 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01311 Vivi-Chr4 44938958 44941829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01311 16 342 Response Regulator Gene Family AT2G25180 55.589 2.24e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi4g01311 Response_reg 7.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01311 K14491 - vvo:131594764 1164.44