Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01279 ATGATTCAGAAGAGAAAGAATTTCGTAGTAAGACCACTGGTAAGAGATGACAAGTTGCCTCCCAAATGTAACACGAAAACTTTGTTTATTCGCAAGATCGGGGACGAGAAATCACTTCCCAAAGATGCTACTATTGGAGATGACATAGAAAAGACACAAATTGCTAAGGTTTCTCCAAAGCATGTCTGCAAATATTGGATGAATGGCGATTGTGTTCGTGGTGAACATTGCCGGAATTTACATTCCTGGTTTTATGGTGATGGCTTTGCCACATTAGTAAAGCTTCAAGGACACAAGAAGCTTGTCACTGGAATTGCACTTCCACATGGATCAAACAAACTTTATTCTAGCAGCACCGATGGGACACTTCGGACATGGGACTGTGTTACTGGTCAATGTACTAATTTGACGAATCTTGGTGCTGAAGCTACCTCTTTGATCAGTGAGGGCCCGTGGATTTTTGTTGGTCTGCCTAACATTGTCAAGGCATGGAATATGCAAACTGCTTCACATTTAACTCTTGATGGACCTAAGGGACGAGTCCTTGCCATGGTTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGATTATTTAA 597 0.4204 MIQKRKNFVVRPLVRDDKLPPKCNTKTLFIRKIGDEKSLPKDATIGDDIEKTQIAKVSPKHVCKYWMNGDCVRGEHCRNLHSWFYGDGFATLVKLQGHKKLVTGIALPHGSNKLYSSSTDGTLRTWDCVTGQCTNLTNLGAEATSLISEGPWIFVGLPNIVKAWNMQTASHLTLDGPKGRVLAMVVGNDTLLAGAEII 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01279 198 SUPERFAMILY WD40 repeat-like 89 193 IPR036322 GO:0005515
Vivi4g01279 198 SMART WD40_4 88 127 IPR001680 GO:0005515
Vivi4g01279 198 SMART c3hfinal6 58 83 IPR000571 GO:0046872
Vivi4g01279 198 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vivi4g01279 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 136 IPR001680 GO:0005515
Vivi4g01279 198 ProSiteProfiles Zinc finger C3H1-type profile. 62 84 IPR000571 GO:0046872
Vivi4g01279 198 PANTHER - 46 195 IPR044715 -
Vivi4g01279 198 Gene3D - 74 196 IPR015943 GO:0005515
Vivi4g01279 198 SUPERFAMILY CCCH zinc finger 60 82 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01279 Vivi-Chr4 43279238 43280504 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi4g01279 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01279 - - vvo:131597128 414.461