LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g01240	ATGGCCGCGTCTGCTACTACTTCTGCTTCTCATTTCCTTCGTCCTCTTCATCAATTACAATTCCCGAAATGCCCTCACCTCTTTTCCGAATCCCAGTTTCGCCCTCGGCTACTCCGTGCTCAAACCCAAAGGTTCACCATTCGCGCCACCGCCGCTGTTGCCGTGGAGTCGGATTTAAGTACGCATAAGGATCAGGAAAAGGAAACACAAGTGGACTTATTTGCGTGCCCAATATGCTACGAACCATTGATAAGAAAAGGTCCTGTTGGTCTTAACTTATCAGCAATCTACAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCGTACACTAGCAAAGACGGATATTTGGATCTGACACTGACTTCTGGATTGAAAGATTACACGGAAGTTCAACCAGTTCGGACAGAGCTTTTTAGGAGTCCTCTTGTTTCATTCTTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGCCCTGATGAAGAGTTCAGAATGGCTCAAGAGTATTTTGAACCTGCTAAAGGTGGTCTGGTTGTCGATGTTAGCTGTGGGAGCGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTATTCTGGAGTCATTGCACTAGACTTTTCTGAAAATATGCTTCGCCAATGCAACGATTTCATTAAGAAAGACACATCACTCTCAACACTTAATATTGCCCTTGTAAGGGCAGATGTTTCCAGGCTTCCCTTCGCATCAAGTTCGGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCACCCTCCAATGCTGTTGCTGAAATCACCCGTGTACTGAGAAGTGGTGGAGTATTTGTCGGAACCACTTTTCTTCGTTATACTTCATCAACTCCTTGGTTTGTACGCCCCTTCAGAGAGAGGAATTCTCAAGGTTATGGCTTCTTAACAGAAGAAGAGATCAAAGACCTTTGCACTTCATGTGGACTTACAAATTACTCATGCAAAGTTCAGAAGTCTTTTATCATGTTTACAGCTCAGAAGCCTTAA	1041	0.4409	MAASATTSASHFLRPLHQLQFPKCPHLFSESQFRPRLLRAQTQRFTIRATAAVAVESDLSTHKDQEKETQVDLFACPICYEPLIRKGPVGLNLSAIYRSGFKCKRCQKSYTSKDGYLDLTLTSGLKDYTEVQPVRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLVVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCNDFIKKDTSLSTLNIALVRADVSRLPFASSSVDAVHAGAALHCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTPWFVRPFRERNSQGYGFLTEEEIKDLCTSCGLTNYSCKVQKSFIMFTAQKP	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g01240	346	Pfam	Methyltransferase domain	184	284	IPR013216	GO:0008168
	Vivi4g01240	346	PANTHER	METHYLTRANSFERASE	85	333	-	-
	Vivi4g01240	346	FunFam	Putative methyltransferase, chloroplastic	139	345	-	-
	Vivi4g01240	346	CDD	AdoMet_MTases	183	289	-	-
	Vivi4g01240	346	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	146	345	IPR029063	-
	Vivi4g01240	346	Gene3D	Vaccinia Virus protein VP39	139	345	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g01240	Vivi-Chr4	40331031	40334239	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Vivi4g01240		Methyltransf_11	3.3e-21	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g01240	-		-	gmx:100812067	561.992