Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01217 ATGGGGAAGAAAAAGAAGCAAATAGGAGAAACAAGTGAAGAGAATGGGAATCATAGAGTAATCGAGGATAAAAGTCCGAATGTGTATGATAATGATACTATAGTGTTTATATCGATGGCTCAAGAGTTGAAGGAAGAAGGGAACAAGATGTTTCAGAAGAGAGATCTTCCGGGAGCTATGGTGAAGTATGAGAAAGCGCTTAAATTGCTTCCGAGTAATCATATAGATGTGTCGTATTTGCGTAGCAATATGGCTGCATGTTATATGCAGATGGGACTTGGTGAGTATCCTAGGGCAATTAATGAATGTAATTTGGCTCTTGAGGTTACTCCGAAATATAGTAAGGCTTTGTTGAAGAGAGCGAGGTGTTATGAGGCTTTGAATAGACTTGATTTGGCGTTGAGAGATGTTAGCGCTGTTTTGATGATGGAGCCGAATAATATCATGGCGGTGGAGATCTCGGATAAGGTGAAAAGTGCGCTTGAAGATAGAGGGTTGAGAGTAAATGATGCGCAGATTGAGTTGCCTCCAGATTATGTTGAACCTTCTTTTGAAGTCTCTTCTAAAAAGGTAGTGAAAGAAAAGAAACACAAGAAGAAGAGCAAAAAAGAGAAGGTGACGGCTTCAAGTGAAATTGTAGAAAATCAAGCTGAGGAGAAACTTGACGATAGAGGATTAGGAGTAAATGATGCGCAGATTGAGTTGCCTCCGGATTCTGTTGAACCTTCTTTTGGTGTCTCTTCTAGTAAGGAAGGGAAAGAAAAGAAACACAAGAAGAAGAGCAAAAAAGAGAAGGTGACGGCTTCCAATGAAGTTGTAGAAAATCAAGCTGAAGAGAAACTTGAAGAGACGGAAGACGAGGTCAACCTTGCAGCTCATAAGGCTGACGACAATCATCTCGAAGAGAAAAAAAAGGGTGATAAATCAAAAAAGAAGGGGGCCAAGAAAAAGATTGATATGCAGAAAGATGATGCTAAGGAGGTCAATGAAGAAAATAGTAATGGTATAAATGAACCTAAAAAAGCAGTGAAACTTGTCTTTGGTGATGATATAAGATGGGCTCAATTACCAGTTAATTGCAGCCTCTTGCAGCTTAGAGAAGTTATCTGTGACCGTTTCCCAGGCCTAGGAGCAGTTCTTGTCAAATATAGGGATCTAGAAGGTGATTTGATCACAATCACAAATGATGAAGAATTGAAGTTGGCTGAAACAGGATCAGAGGGTTCCATCCGACTGTATATAGTAGAAGCTAATCCTAATCGCGATCCATTCTACGACAAACTTCACGTGAAGGATGTTGAAATTGATAATGCTCCCAAGAATGACTGTGTGGTAAAATCAAACGACATTATTAGCCCATCTTGTGTTGAAGATTGGGTCATTCAATTTGCACAACTGTTTAAGAATCATGTTGGATTTGAATCTGACAGATACTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTAGAGGATACGGTTACAAGTGAGGAAGCGCAAGGCCTATTTGACATGGCAGGAGGTAAATTCCAAGAGATGACGGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAAAGTGTATTTTACTGAAGATTCTTCTAAAGAGCATATGTATGAACAAATCAAAACTTCATATGAATGGGCCCAAAAAGAATATGCCAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATACAGTCAGATTTTTATGAAGGCTTCCTTGCTCTAGGTCAGCAACGGTTCGAGCAAGCAAAACTTTCTTGGTATTATGCACTCAGTAGTAATGTAGATTTAGCAACATGGCCCTCCACAGAGATTCTTCACCTTTACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGATGTGGGAAGAATCACAAGAGCAGGAAGTGAGTGAAACCTCCAATATTGAATTGAACAGGATATTTAAAAATATGTCATCAGATGAAACTGCTGCACTGGCGGCAAACATGAGGTCTCAGATAAATCTCTTGTGGGGTACCATGCTATACGAACGGTCGATTGTAGAATTCAAGTTAGGGCTACCTATATGGCATGAATCTTTAGAAGTTGCAATCGAGAAGTTTGAGCATGCAGGAGCTTCTCCAACAGATACAGCTGTAATGTTGAAAAACCATTGTTCAAATAACAATGCCGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCATCCTTTCGTTTGGAAGCCATGTTCAGAAGACGAGCGTCAAAAATTTACCACGCCTTTGAGCTTGTATGA 2346 0.3981 MGKKKKQIGETSEENGNHRVIEDKSPNVYDNDTIVFISMAQELKEEGNKMFQKRDLPGAMVKYEKALKLLPSNHIDVSYLRSNMAACYMQMGLGEYPRAINECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSAVLMMEPNNIMAVEISDKVKSALEDRGLRVNDAQIELPPDYVEPSFEVSSKKVVKEKKHKKKSKKEKVTASSEIVENQAEEKLDDRGLGVNDAQIELPPDSVEPSFGVSSSKEGKEKKHKKKSKKEKVTASNEVVENQAEEKLEETEDEVNLAAHKADDNHLEEKKKGDKSKKKGAKKKIDMQKDDAKEVNEENSNGINEPKKAVKLVFGDDIRWAQLPVNCSLLQLREVICDRFPGLGAVLVKYRDLEGDLITITNDEELKLAETGSEGSIRLYIVEANPNRDPFYDKLHVKDVEIDNAPKNDCVVKSNDIISPSCVEDWVIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEDTVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKEHMYEQIKTSYEWAQKEYAKAGEKFEAAIKIQSDFYEGFLALGQQRFEQAKLSWYYALSSNVDLATWPSTEILHLYNSAEENMEKGMLMWEESQEQEVSETSNIELNRIFKNMSSDETAALAANMRSQINLLWGTMLYERSIVEFKLGLPIWHESLEVAIEKFEHAGASPTDTAVMLKNHCSNNNAVDGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEAMFRRRASKIYHAFELV 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01217 781 SMART PB1_new 340 417 IPR000270 GO:0005515
Vivi4g01217 781 MobiDBLite consensus disorder prediction 286 334 - -
Vivi4g01217 781 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Vivi4g01217 781 Gene3D - 341 417 - -
Vivi4g01217 781 SMART tpr_5 78 113 IPR019734 GO:0005515
Vivi4g01217 781 SMART tpr_5 114 147 IPR019734 GO:0005515
Vivi4g01217 781 SMART tpr_5 40 73 IPR019734 GO:0005515
Vivi4g01217 781 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Vivi4g01217 781 MobiDBLite consensus disorder prediction 190 335 - -
Vivi4g01217 781 Coils Coil 311 331 - -
Vivi4g01217 781 MobiDBLite consensus disorder prediction 1 24 - -
Vivi4g01217 781 MobiDBLite consensus disorder prediction 204 227 - -
Vivi4g01217 781 Gene3D Tetratricopeptide repeat domain 37 166 IPR011990 GO:0005515
Vivi4g01217 781 Coils Coil 263 294 - -
Vivi4g01217 781 Pfam PB1 domain 342 415 IPR000270 GO:0005515
Vivi4g01217 781 SUPERFAMILY CAD & PB1 domains 342 423 - -
Vivi4g01217 781 ProSiteProfiles PB1 domain profile. 340 417 IPR000270 GO:0005515
Vivi4g01217 781 PANTHER PROTEIN CLMP1 216 779 IPR044517 -
Vivi4g01217 781 SUPERFAMILY TPR-like 40 602 IPR011990 GO:0005515
Vivi4g01217 781 CDD PB1 343 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01217 Vivi-Chr4 38647223 38652537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01217 23 147 Calmodulin-binding Proteins AT3G25230 33.813 7.89e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01217 K26538 - gmx:100820306 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01217 4 38647223 38652537 Vivi4g01217 4 38647223 38652537 ECH