Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01209 ATGAGAGGTGATGCAATGAAGCAGTCTTTTAATCCTTCATATTTTGGTCCTTCCAAGATTCCACCTATTACTGCGCCTGGAAAATCAGAACATGGCGGGTTGGAAGTTTTATCTGGATCTGATGTAAACCATGTTTCTTCAGATGCCAGTCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAATATAAATGAAACTGAAAGCGGTTTTCAAGTTGTTGATGACATCTCAGCTGGCTTTAAAAAGCTTCATCAAGAGGCAGAGCTCAATGGTTCCCTTGAGGATGGTAATAATAATGCAAATGGAACCATGCTTCCTGATGATGATGATGAGCTTTTGGACGGCATATTGGATGACTTTGACCTAAGTGGTTTACCTGGTTCCCTTGAGGATTTGGAAGAATATGATATTTTTGGTAGTGGTGGAGGATTGGAACTTGAAACTGATACACAGGAAAGTCTGAGTGCGGGAGTCTCTAAGTTAAGCTTCTCTGATAGCTCTTCTGGCAATGGTTTTCCCCCTTATTCTCTCCCTAATGGGGTTGGAAGTGGAGCCGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGGAATATTAACAGTAATGTGGAGGATACTGAGCTGCGAACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGATTTGTGATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTTTGCGGCGTAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTAGTAGCTTTCAATTTGGATCCATCAGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATTATTAAATAGGAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTTAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCTGCTCTCCGCCAGGTAATTGGTTACAGTTCAACAGCCCTGTCGAGCAAAGTTCATTGCCAAATATCAATCATTCTCCCAGTTCTAGTATCATAAGCCCAACAACCGGCAGTCATTTATCTGGATTAGCTTCAATTTTGCAACCACAGACGCCAACCACAGTTAAGGCCGCAACCATTGGCAAGGACATGGGCAGGAGTAGTTATCGAGACCACATATTTACCAATATGAGTTCATCCTCTGGATCCACTGTCAACTCGCATTCACTTCCAGAGCCCAAATTTAGTCAATATCGCGGGACTCTGTCCTCGTTTGATACATCAACATCAAATGGATCTTCGGTGGAAACGTTGACCGCACCACAGTTTCTATGGGGAAGTCCAAACTTATCTTCAGCGCAAACCAAACCTTCAGCTTGGCCAAAACCATCTGTTGGACATCAACTTAGTACATCAAATGGAACGAGTCATGCTTTCCCATACTCAAGTCGGAGCAATTCCTTTGTCAATTTGTCCCAACAGCATCACCATCATCACGTTGGTTCTGCTCCTTCACGTTTGCCTTTTCAGAGGCACTTTGGTTTTTTCCCCAAGTCATCCGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGAGTCTAGGGCACACCGATGGAAATTACATGCTAAATGCTGGCGTGTCTATTCCACGAAATATGCCTGATAATGGTTCATCGAACTTCAGAATGAGATCTTCTCCTATACTTAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGATTGCTACCTACTGCTATGGAGAGTTTGACCGACCATGTTAGCAGTAGATGGATTGATAACAATGGAAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTTGACTTGGATAAGATCAGATGTGGTGAAGATACAAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCGAAAATGTTGTTAGCTGCCATTGATGAAAGTCAGAAGGGTACCTATGATTTCCTCTACCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTACGCATTTATCAACATGCTGTCACCTTCCCTCATTATTCCATTCTACGAGACATTCAATGGGAAGAGGTGGGAGAAGTTCAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGAATGCTCTTGTGAATCATTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTTTTCGACCCAGATGGTTCTGAAGCTGTTGATCAGGTCATACAAGAGAGTTTCCCCTCCTACTATAGCAATATTCAGGCAGTGAAGCCAAGTGAATTTCAATTAAGTGATTCGCTCGGATTCCCTTCAAAGAATGGTCTTCCTATGAGTTTGGATGCAAGTTAA 2586 0.4188 MRGDAMKQSFNPSYFGPSKIPPITAPGKSEHGGLEVLSGSDVNHVSSDASLFSSSLPVLPHEKLNINETESGFQVVDDISAGFKKLHQEAELNGSLEDGNNNANGTMLPDDDDELLDGILDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDTQESLSAGVSKLSFSDSSSGNGFPPYSLPNGVGSGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVAFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLACSPPGNWLQFNSPVEQSSLPNINHSPSSSIISPTTGSHLSGLASILQPQTPTTVKAATIGKDMGRSSYRDHIFTNMSSSSGSTVNSHSLPEPKFSQYRGTLSSFDTSTSNGSSVETLTAPQFLWGSPNLSSAQTKPSAWPKPSVGHQLSTSNGTSHAFPYSSRSNSFVNLSQQHHHHHVGSAPSRLPFQRHFGFFPKSSETSLMNNVGYSGMSLGHTDGNYMLNAGVSIPRNMPDNGSSNFRMRSSPILSPVFLGNGPYPGLLPTAMESLTDHVSSRWIDNNGSQVDSKKLFQLDLDKIRCGEDTRTTLMIKNIPNKYTSKMLLAAIDESQKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKRWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFDPDGSEAVDQVIQESFPSYYSNIQAVKPSEFQLSDSLGFPSKNGLPMSLDAS 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01209 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Vivi4g01209 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 47 823 - -
Vivi4g01209 861 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Vivi4g01209 861 CDD RRM2_MEI2_like 285 355 - -
Vivi4g01209 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Vivi4g01209 861 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Vivi4g01209 861 MobiDBLite consensus disorder prediction 1 32 - -
Vivi4g01209 861 Gene3D - 286 384 IPR012677 -
Vivi4g01209 861 MobiDBLite consensus disorder prediction 524 548 - -
Vivi4g01209 861 CDD RRM1_MEI2_like 200 276 IPR034453 -
Vivi4g01209 861 SMART rrm1_1 202 270 IPR000504 GO:0003723
Vivi4g01209 861 SMART rrm1_1 699 775 IPR000504 GO:0003723
Vivi4g01209 861 SMART rrm1_1 287 355 IPR000504 GO:0003723
Vivi4g01209 861 CDD RRM3_MEI2_like 700 785 IPR034454 -
Vivi4g01209 861 MobiDBLite consensus disorder prediction 463 483 - -
Vivi4g01209 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 353 IPR000504 GO:0003723
Vivi4g01209 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Vivi4g01209 861 Pfam RNA recognition motif 2 697 793 IPR007201 -
Vivi4g01209 861 Gene3D - 190 285 IPR012677 -
Vivi4g01209 861 FunFam Protein MEI2-like 1 285 380 - -
Vivi4g01209 861 FunFam MEI2-like protein 5 isoform 2 190 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01209 Vivi-Chr4 38276351 38282273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01209 196 394 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 4.04e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01209 - - gmx:100800877 1325.07