Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01207 ATGAAGCAGTCTTTTAATCCTTCATATTTTGGTCCTTCCAAGATTCCACCTATTACTGCGCCTGGAAAATCAGAACATGGCGGGTTGGAAGTTTTATCTGGATCTGATGTAAACCATGTTTCTTCAGATGCCAGTCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAATATAAATGAAACTGAAAGCGGTTTTCAAGTTGTTGATGACATCTCAGCTGGCTTTAAAAAGCTTCATCAAGAGGCAGAGCTCAATGGTTCCCTTGAGGATGGTAATAATAATGCAAATGGAACCATGCTTCCTGATGATGATGATGAGCTTTTGGACGGCATATTGGATGACTTTGACCTAAGTGGTTTACCTGGTTCCCTTGAGGATTTGGAAGAATATGATATTTTTGGTAGTGGTGGAGGATTGGAACTTGAAACTGATACACAGGAAAGTCTGAGTGCGGGAGTCTCTAAGTTAAGCTTCTCTGATAGCTCTTCTGGCAATGGTTTTCCCCCTTATTCTCTCCCTAATGGGGTTGGAAGTGGAGCCGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGGAATATTAACAGTAATGTGGAGGATACTGAGCTGCGAACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGATTTGTGATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTTTGCGGCGTAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTAGTAGCTTTCAATTTGGATCCATCAGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATTATTAAATAGGAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTTAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCTGCTCTCCGCCAGGTAATTGGTTACAGTTCAACAGCCCTGTCGAGCAAAGTTCATTGCCAAATATCAATCATTCTCCCAGTTCTAGTATCATAAGCCCAACAACCGGCAGTCATTTATCTGGATTAGCTTCAATTTTGCAACCACAGACGCCAACCACAGTTAAGGCCGCAACCATTGGCAAGGACATGGGCAGGAGTAGTTATCGAGACCACATATTTACCAATATGAGTTCATCCTCTGGATCCACTGTCAACTCGCATTCACTTCCAGAGCCCAAATTTAGTCAATATCGCGGGACTCTGTCCTCGTTTGATACATCAACATCAAATGGATCTTCGGTGGAAACGTTGACCGCACCACAGTTTCTATGGGGAAGTCCAAACTTATCTTCAGCGCAAACCAAACCTTCAGCTTGGCCAAAACCATCTGTTGGACATCAACTTAGTACATCAAATGGAACGAGTCATGCTTTCCCATACTCAAGTCGGAGCAATTCCTTTGTCAATTTGTCCCAACAGCATCACCATCATCACGTTGGTTCTGCTCCTTCACGTTTGCCTTTTCAGAGGCACTTTGGTTTTTTCCCCAAGTCATCCGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGAGTCTAGGGCACACCGATGGAAATTACATGCTAAATGCTGGCGTGTCTATTCCACGAAATATGCCTGATAATGGTTCATCGAACTTCAGAATGAGATCTTCTCCTATACTTAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGATTGCTACCTACTGCTATGGAGAGTTTGACCGACCATGTTAGCAGTAGATGGATTGATAACAATGGAAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTTGACTTGGATAAGATCAGATGTGGTGAAGATACAAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCGAAAATGTTGTTAGCTGCCATTGATGAAAGTCAGAAGGGTACCTATGATTTCCTCTACCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTACGCATTTATCAACATGCTGTCACCTTCCCTCATTATTCCATTCTACGAGACATTCAATGGGAAGAGGTGGGAGAAGTTCAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGAATGCTCTTGTGAATCATTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTTTTCGACCCAGATGGTTCTGAAGCTGTTGATCAGGTCATACAAGAGAGTTTCCCCTCCTACTATAGCAATATTCAGGCAGTGAAGCCAAGTGAATTTCAATTAAGTGATTCGCTCGGATTCCCTTCAAAGAATGGTCTTCCTATGAGTTTGGATGCAAGTTAA 2571 0.4185 MKQSFNPSYFGPSKIPPITAPGKSEHGGLEVLSGSDVNHVSSDASLFSSSLPVLPHEKLNINETESGFQVVDDISAGFKKLHQEAELNGSLEDGNNNANGTMLPDDDDELLDGILDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDTQESLSAGVSKLSFSDSSSGNGFPPYSLPNGVGSGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVAFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLACSPPGNWLQFNSPVEQSSLPNINHSPSSSIISPTTGSHLSGLASILQPQTPTTVKAATIGKDMGRSSYRDHIFTNMSSSSGSTVNSHSLPEPKFSQYRGTLSSFDTSTSNGSSVETLTAPQFLWGSPNLSSAQTKPSAWPKPSVGHQLSTSNGTSHAFPYSSRSNSFVNLSQQHHHHHVGSAPSRLPFQRHFGFFPKSSETSLMNNVGYSGMSLGHTDGNYMLNAGVSIPRNMPDNGSSNFRMRSSPILSPVFLGNGPYPGLLPTAMESLTDHVSSRWIDNNGSQVDSKKLFQLDLDKIRCGEDTRTTLMIKNIPNKYTSKMLLAAIDESQKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKRWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFDPDGSEAVDQVIQESFPSYYSNIQAVKPSEFQLSDSLGFPSKNGLPMSLDAS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01207 856 FunFam MEI2-like protein 5 isoform 2 185 279 - -
Vivi4g01207 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 348 IPR000504 GO:0003723
Vivi4g01207 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Vivi4g01207 856 CDD RRM1_MEI2_like 195 271 IPR034453 -
Vivi4g01207 856 SUPERFAMILY RNA-binding domain, RBD 694 779 IPR035979 GO:0003676
Vivi4g01207 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 44 818 - -
Vivi4g01207 856 Pfam RNA recognition motif 2 692 788 IPR007201 -
Vivi4g01207 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Vivi4g01207 856 MobiDBLite consensus disorder prediction 458 478 - -
Vivi4g01207 856 Gene3D - 281 379 IPR012677 -
Vivi4g01207 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Vivi4g01207 856 FunFam Protein MEI2-like 1 280 375 - -
Vivi4g01207 856 MobiDBLite consensus disorder prediction 1 31 - -
Vivi4g01207 856 Gene3D - 185 280 IPR012677 -
Vivi4g01207 856 MobiDBLite consensus disorder prediction 519 543 - -
Vivi4g01207 856 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Vivi4g01207 856 SMART rrm1_1 282 350 IPR000504 GO:0003723
Vivi4g01207 856 SMART rrm1_1 694 770 IPR000504 GO:0003723
Vivi4g01207 856 SMART rrm1_1 197 265 IPR000504 GO:0003723
Vivi4g01207 856 CDD RRM3_MEI2_like 695 780 IPR034454 -
Vivi4g01207 856 CDD RRM2_MEI2_like 280 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01207 Vivi-Chr4 38276351 38282566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01207 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 4.04e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01207 - - gmx:100787152 1325.07