Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01165 ATGGGGACCAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAAGGGTTACCGCTAAAATCAAGCCTTCCGAGGGTGCTGATTTTCTGCCCTTAGCCGGTGGTCCGGGTCGCAAACTTCCTGAATTGAAACCTCTGGAGAACACTTCACCTGTTTTGTACATTGGTAGAATTCCACATGGCTTCTATGAGAAGGAGATGGAAGCTTATTTTGCACAATTTGGAACCATCAAGAGAATGAGAATAGCCCGAAATAAAAAGACCGGAAAATCTAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTTGCAAAAATTGTTGCTGATACTATGCATAATTATTTACTTTTCGAACACCTTCTTCAGGTTTATGTGGTGCCTTTAGAAAATGTTCATCTAAGATTGTGGAAAGGATTCAATTACCGTTACAAGCCCTTGGACTCTCTCCAAATTGAACGAGAGCGACATGACAAAGAAAGGACACTGGAAGAACACAAAAAGTTGGTTGATAGAGTTATGAAACGTGACAAAAAACGCCGTAATAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCCCTGATTGCGGGTAACAACCAACCTGCTCCAAAGAAAATAAAGTTCGAAGACTGA 633 0.4092 MGTKAKKAMKKNMKRVTAKIKPSEGADFLPLAGGPGRKLPELKPLENTSPVLYIGRIPHGFYEKEMEAYFAQFGTIKRMRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVVPLENVHLRLWKGFNYRYKPLDSLQIERERHDKERTLEEHKKLVDRVMKRDKKRRNRIEAAGIDYECPLIAGNNQPAPKKIKFED 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01165 210 Gene3D - 3 125 IPR012677 -
Vivi4g01165 210 Coils Coil 151 171 - -
Vivi4g01165 210 CDD RRM_NIFK_like 51 123 - -
Vivi4g01165 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 123 IPR000504 GO:0003723
Vivi4g01165 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 7 209 - -
Vivi4g01165 210 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Vivi4g01165 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Vivi4g01165 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01165 Vivi-Chr4 36304187 36306292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01165 52 123 Eukaryotic Initiation Factors Gene Family AT1G71770 30.556 3.97e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01165 K14838 - gmx:100778780 329.331