Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01160 ATGGAACAGTTGAAATTGGATGCAAATTCTGATGCTAAAGAGGATGGTCCTCTTCGGCATAAGCCGAAAAAGAACAATGCACTCGAGGCTTCTGAAAGTCTGAGAAGTAAAAAGATATCTGCTAGATGGGATCCAGCAGAGCCATGTCGGCCAATAATAGACGAAGCACCTGTGTTTCATCCGACTATCGAAGAGTTTGAAGATACTCTGAGTTATATTGCGAAGATACGCCCCCTAGCTGAACCGTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTTCCACCTTGTCTTCTTAAGGAGAAAGATATATGGGAAAATGCTGAGTTTTCGACTCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAGGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCCAAAACAGGAACATGTAGGAGAGTTTCCAATTCTGCTTCTGAGGCTAATAAAGCTTGTGAAGCTGAAGAGAAATACGGATTCCAATCAGGGTCGGATTTCACGTTTAAAGACTTTCAGCAGTATGCTAGTTACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAACGATGGCGACAAACTCAGTGATATTAACCGCCAAAAGAGACCGGAGCCCTCCGAGGAGGAAATTGAAGGTGAATACTGGCGGATAGTCGAGCAACCAACTGATGAAGTTGAGGTGTTTTATGGAGCCGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCATCCTTAACTAAGGGTTATCTGGATCAGTATGCCCTTTCTGGTTGGAATCTAAATAACTTCCCACGACTACCAGGTTCTGTACTAAGTTTCGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTGGGGTGACCCCAAAATATGGTATGGAGTACCTGGAAGCCATGCTTCTCCTTTTGAAGATGCAATGAAGAAGCACTTGCCTGATTTGTTTGAAGAACAACCTAATCTACTCAATGATCTGGTTACTCAATTATCTCCATCAATTCTTCAATCTGAGGGAGTTCCCGTTTATCGCACTGTTCAGCATTCTGGGGAATTTGTCATTACCTTTCCAAGGGGGTACCACTCTGGGTTCAATTGTGGTTTCAACTGTGCAGAAGCAGTGAATGTAGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTATACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTCTTATTTGGATCATCATTAGAAGCTATACGAGCCCTTGCAGAGTTAACTCTTCACGGAAAGGAAAGTCCAAAAAACTTGAAATGGAAAAGCGTATGTGGGAAAGATGGAGTTCTTACTAATGCATTTAAGGCAAGGATAAGGATGGAAGAAGAGAGGCTAGCCTGTCTTCCAAATCATTTTAATTTGCGGAAGATGGCCAATGACTTTGATTTGCATACAGAAAAAGAATGCTTCTCTTGTTTCTATGACTTATACCTATCTGCTGTAGGTTGTGAGTGCTCTCCTGATAGATATTCCTGTCTTAAGCACGCAAGTTCGCTCTGCTCATGCGAAATGGACAAAAGATTTGTTCTACTTCGACATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCACATGCTCTCGAATTATGGGAAAATAGAAACTTCGGAATGGTTTCTGCTGAGGCCAACGAGGTGGAGGGAGACAAAGGTCTCGGAGAAACCAAGGATAGTTCAAATATTAATGTTTCGTCAGAGCCGATGCAGTGCGAATCTCACCCTATAACTCTTAGTGCACCAAATGAAAGTATAGATAGTGATAATGACAATAAAATAATTGTAGACAAAGATACGGCGGACCACGCAGCTTCTCTAGATTTGAACCTTGATCTTATATCTGGTGGAAATGAAAAGCATTTGCTGCATATTGCTGAGAACCATCAAGAGAAAGGTGATTCACCAGAGGAAAAAGTAAGCTCTTTAGAGAGCAAAAAGGAACAAAACAACATGGAACTTGTTGGTATCGGTGACCTATCGCGTTCATTTTCTGTTGTGAAGACAGAAGTTTCATCATGTTCAAGGGATATTATTCACTATTCTTGTACATCCGATGGTGGAAAATATGAGATGGATCTGCAAATTGATTCAGAATCAAGAAAGAAACCCAAAATTGCGTGTGAAAATACGAGTATATCTTTGACGCAAGAGAGCTGCCTAATGCAAATTTTTGGTGCTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTCATGGAAAGCCATGGTCCAGTAAGAATGCAATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAATATACTCAATCCAACAAGAATATGTAGCTATGTTTCTGAAGTCATTGATGCTGGACTTCTTGGCCCTCTTTTCAAGGTTACAATGGAAGAATGTCCGAGCGACACTTTTACAGACACCTCAGCAGATAAGTGTTGGGAATCAGTTCTAAAACGACTTCATAATGAAGTTATTGAGCGAAGGAATCGAGGTGAACGTGAACTTCCTTCCTTAGAGCTTCTGAACAGCATTAACGGTCTTAGAATGTTTGGCTTCCTTTCGCCGTCCATTATTCAGGCCATTGAAGGTCAAGATCCCGGTCATCAGTGTGCAGAGTATTGGAATCACAAAGTTTTCCCTACATCTCCAGGCAGTGTCATCGATAACTGTAACGTCCTATGTTGTTCAAGTAGCCCTTTAGATAATAACGTCAACATCAAAGTTTTCGGTATCAATTTGATTGATCATACAAAGGATAACAATATAGGAGGAAGTTGTCATTCTCTTGAAGAGATGAAACCAATACTACAAAAGGCAAGTCTTGACGAGCTAAACTTGTTGCGCAAGTTACTTATCTTGGACTCACAGTGCTCTGAGTGGAAAACGACATTGATGTCACTAATGGATGAGATCCAGAAAAGTTTGTAG 3072 0.4085 MEQLKLDANSDAKEDGPLRHKPKKNNALEASESLRSKKISARWDPAEPCRPIIDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKTGTCRRVSNSASEANKACEAEEKYGFQSGSDFTFKDFQQYASYFKECYFGLKDANDGDKLSDINRQKRPEPSEEEIEGEYWRIVEQPTDEVEVFYGADLETGVFGSGFPKASSSLTKGYLDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASPFEDAMKKHLPDLFEEQPNLLNDLVTQLSPSILQSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKESPKNLKWKSVCGKDGVLTNAFKARIRMEEERLACLPNHFNLRKMANDFDLHTEKECFSCFYDLYLSAVGCECSPDRYSCLKHASSLCSCEMDKRFVLLRHNMNELNKLLEALEGDSHALELWENRNFGMVSAEANEVEGDKGLGETKDSSNINVSSEPMQCESHPITLSAPNESIDSDNDNKIIVDKDTADHAASLDLNLDLISGGNEKHLLHIAENHQEKGDSPEEKVSSLESKKEQNNMELVGIGDLSRSFSVVKTEVSSCSRDIIHYSCTSDGGKYEMDLQIDSESRKKPKIACENTSISLTQESCLMQIFGASVKPISLGSVVHGKPWSSKNAIYPKGFKSRVNFFNILNPTRICSYVSEVIDAGLLGPLFKVTMEECPSDTFTDTSADKCWESVLKRLHNEVIERRNRGERELPSLELLNSINGLRMFGFLSPSIIQAIEGQDPGHQCAEYWNHKVFPTSPGSVIDNCNVLCCSSSPLDNNVNIKVFGINLIDHTKDNNIGGSCHSLEEMKPILQKASLDELNLLRKLLILDSQCSEWKTTLMSLMDEIQKSL 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01160 1023 Gene3D - 780 919 - -
Vivi4g01160 1023 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vivi4g01160 1023 Gene3D Cupin 41 415 - -
Vivi4g01160 1023 MobiDBLite consensus disorder prediction 682 701 - -
Vivi4g01160 1023 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 870 - -
Vivi4g01160 1023 Pfam F/Y rich C-terminus 837 924 IPR003889 GO:0005634
Vivi4g01160 1023 FunFam Putative lysine-specific demethylase JMJ16 781 919 - -
Vivi4g01160 1023 SMART cupin_9 265 431 IPR003347 -
Vivi4g01160 1023 Pfam jmjN domain 57 90 IPR003349 -
Vivi4g01160 1023 SMART JmjN_1 55 96 IPR003349 -
Vivi4g01160 1023 MobiDBLite consensus disorder prediction 682 700 - -
Vivi4g01160 1023 ProSiteProfiles FYR domain FYRC motif profile. 835 925 IPR003889 GO:0005634
Vivi4g01160 1023 SMART fyrn_3 789 833 IPR003888 GO:0005634
Vivi4g01160 1023 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Vivi4g01160 1023 Coils Coil 560 580 - -
Vivi4g01160 1023 ProSiteProfiles FYR domain FYRN motif profile. 775 833 IPR003888 GO:0005634
Vivi4g01160 1023 MobiDBLite consensus disorder prediction 122 151 - -
Vivi4g01160 1023 SUPERFAMILY Clavaminate synthase-like 262 446 - -
Vivi4g01160 1023 MobiDBLite consensus disorder prediction 620 640 - -
Vivi4g01160 1023 Pfam C5HC2 zinc finger 521 573 IPR004198 -
Vivi4g01160 1023 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Vivi4g01160 1023 SMART fyrc_3 839 933 IPR003889 GO:0005634
Vivi4g01160 1023 MobiDBLite consensus disorder prediction 128 145 - -
Vivi4g01160 1023 MobiDBLite consensus disorder prediction 1 35 - -
Vivi4g01160 1023 Pfam F/Y-rich N-terminus 786 830 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01160 Vivi-Chr4 36112663 36118123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01160 742 962 JUMONJI Transcription Factor Family AT1G30810 42.986 5.20e-48 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi4g01160 JmjC 2.3e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01160 K11446 - gmx:100801775 1459.51