Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01134 ATGCGGAGCCACATTGTGTGTAATGGGTGTAGGAACATGTTGCTTTACCCTAGAGGAGCGACCAATGTTTGTTGTGCATTGTGCAACACAATTACGCCTGTTCTTCCTCCCGGAATGGAAATGTCTCAACTTTATTGTGGAGGATGTAGGACATTGTTAATGTACACACGTGGCGCTACTAGCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTACCAGATTCTAATCAAATGAGCCATATCCATTGTGGGAACTGTCGAACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGCGCAATATGTCACTTTATAACTAATGTCAGTATGACCAATGGAAGGCCTCCGGTTCCTGCACAGAGACCTAATGAAACAACCAGTTCCGAAACGTCAAGACCCCGCTTTGAGAGCCAAACCGTTGTAGTAGAAAATCCTATGTCCGTTGATTCAAATGGGAAATTGGTAAGCAATGTTGTTGTGGGTGTTACAACAGAGAAGAAGTGA 513 0.4366 MRSHIVCNGCRNMLLYPRGATNVCCALCNTITPVLPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCNTINLVPDSNQMSHIHCGNCRTTLMYPYGAPSVKCAICHFITNVSMTNGRPPVPAQRPNETTSSETSRPRFESQTVVVENPMSVDSNGKLVSNVVVGVTTEKK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01134 170 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Vivi4g01134 170 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Vivi4g01134 170 NCBIfam zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Vivi4g01134 170 PANTHER PROTEIN LSD1 3 169 IPR040319 -
Vivi4g01134 170 Pfam LSD1 zinc finger 7 31 IPR005735 -
Vivi4g01134 170 Pfam LSD1 zinc finger 84 108 IPR005735 -
Vivi4g01134 170 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vivi4g01134 170 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01134 Vivi-Chr4 35130930 35135512 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vivi4g01134 zf-LSD1 9.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01134 - - gmx:100776394 298.516