Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01133 ATGCGGAGCCACATTGTGTGTAATGGGTGTAGGAACATGTTGCTTTACCCTAGAGGAGCGACCAATGTTTGTTGTGCATTGTGCAACACAATTACGCCTGTTCTTCCTCCCGGAATGGAAATGTCTCAACTTTATTGTGGAGGATGTAGGACATTGTTAATGTACACACGTGGCGCTACTAGCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTACCAGATTCTAATCAAATGAGCCATATCCATTGTGGGAACTGTCGAACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGCGCAATATGTCACTTTATAACTAATATGACCAATGGAAGGCCTCCGGTTCCTGCACAGAGACCTAATGAAACAACCAGTTCCGAAACGTCAAGACCCCGCTTTGAGAGCCAAACCGTTGTAGTAGAAAATCCTATGTCCGTTGATTCAAATGGGAAATTGGTAAGCAATGTTGTTGTGGGTGTTACAACAGAGAAGAAGTGA 507 0.4359 MRSHIVCNGCRNMLLYPRGATNVCCALCNTITPVLPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCNTINLVPDSNQMSHIHCGNCRTTLMYPYGAPSVKCAICHFITNMTNGRPPVPAQRPNETTSSETSRPRFESQTVVVENPMSVDSNGKLVSNVVVGVTTEKK 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01133 168 PANTHER PROTEIN LSD1 3 167 IPR040319 -
Vivi4g01133 168 MobiDBLite consensus disorder prediction 116 138 - -
Vivi4g01133 168 Pfam LSD1 zinc finger 7 31 IPR005735 -
Vivi4g01133 168 Pfam LSD1 zinc finger 84 108 IPR005735 -
Vivi4g01133 168 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vivi4g01133 168 NCBIfam zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Vivi4g01133 168 NCBIfam zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Vivi4g01133 168 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01133 Vivi-Chr4 35130928 35135512 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vivi4g01133 zf-LSD1 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01133 - - gmx:100527656 295.049