Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01107 ATGCAGGGTGGTGGTTTTGGAAGTGGGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTCACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTAGGAATCGGCAACTTTTCCCGGTTGATCCCGAAAATGTTGATGGTTCGAACAATTTGGTTTCGGGTGAAGGAAGTAGAGAATTGGAGAAGAGAAGGAGGGGTTTTTTCGATGAAGGGTTGGAGGTGAATGATGATTTTGGTTCTCTGAATTTGAATCTTGGGGGTCAAGTTTACCCGATTATGGAAGGGGAGGAAAGAAGTGGCAAGAAAACGAAGATTACGGTGACTACTACTTCGAATCGGGCAGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAACGCAAAGGATTATCATCGTCGTCATAAAGTTTGTGTTGTGCATTCTAAGGCTAGTAAAGCGCTGGTGGGAAATGTTATGCAGCGGTTTTGTCAGCAGTGTAGCAGGTTTCATGTTCTTGAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTTTAGGTCACAATATCAGGAGGAGGAAGGTACATCTCGATGCGGCAGGCTCTCCGATTGAAGAAAGGGGGACTAGCTATCTATTGCCGAGTATACTAAGGATACTGTCCAATATGCAGTCAAACGAAGCAGATCATTTGGGAAACTCAGATGTTCTTTCTCGTCTACTTGGGAACCTCGCAAGTGTAACTGGTGCAGTAAACGGAAGGAATATAGCGTCATTTTTGGAAGGATTTCAAAATTTAGTAAAAGCTGGTACATCTGGAGCTGCACAAAATGTTCCAAACACAAATCCAATTGGTTCTGAAGCACCAAGACCTTCCGATTCTTCCCTCAAAATGAATAACAATCTAATCCACCAGGACCCTCCTGAATCCAGGTTACAGTGTGCGACAGTTCCTTCAAATCACACGGCTCCAAAATGTATACCTTCAAGCAGTGTTGGCCTTCCGCCTCGACCAGTTGCCGTTGAGACTACAGCCGGAAGAAATGGTTTAATCAATATTGACCTGAATAATGTATATGACGACGCGCAGGATGTTGAGAACCCCGAAAGTTCTCGTCCTTACGTGGCTTCTGGGGTTGGATCTCATGATCATCCTTCATTTGTACAATATGAATCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCCACCCAGTCGCCATCTAGTTCTAGCGGGGAAGGCCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAATGATTTCCCTGATGTTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACAGAGATCGAGAGCTATATAAGGCCAGGCTGTATTATTTTAACCATATGTCTCCGGCTAGAAAATTCCGCATGGGACGAGCTATGCTATAATCTGGGATCTAGCTTGAGAAAGCTTCTAGCTGCATCGAATGATTCAATTTGGAGAATAGGGTTGATATATACAAGAGTGCGGAACTCTGTAGCTATTCTGTATAATGGTCAGGTGTTCTTGGACATGCCATTGCGTCTTGGAAGCCAGGAAAATTGTCAGATTTTGTGCGTTAAGCCCCTCGCTGTTTCCGCGAGTACAGACGTAAAATTTTCGGTGAAAGGGTTAAACCTTTTCTTGAATAGTGCAAGGATACTCTGCGCACTCGAAGGAAAGTATCTGGTAGAGGATAGGTGTTATGATTTGATTGATGGTTCTGGTGCAGCCACTGGACATCACGAGCTTCAGAATCTCAGCTTCTCGTGTCGTATACCAAATATGTCCGGAAGAGGGTTTATTGAGGTCGAAGATGATTGTCTCGGCAGCTGTTCCTTTCCATTCATAGTTGCCGAGCCTGAAATTTGTTCCGAGATATGTAATCTGGAAACTGTCATTGAAGCAGCGGAGACCGCTGATGACATCCAGATAAAAGCTAAATTAATGGAAGAAAAGACCCGGGCAATGAATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAATCCGTGTGAAATATAGGCTAGGGCCAGCGGCACCTGTTCAAGATCGCTTTCACTTTAATCGCTACACATGGCTTGTTGGCTTCTCTATGGATCATGATTGGTGCGCTGTGATGAAAAAACTATTGGACATTATCTTTGAAGGCGAAGTTGATACTGGAGAACATACCTCTGCTGAGCTTGCGTTGTTAAACATGGGCCTTCTGCATAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAACTTTGTGCCAATTAAGGCGTCAGATGGCGGAGATAGTAAAGAGATGCAAGTCAATAAATCCCCCGACAGATTCTTGTTTAGACCTGATGCTGTTGGGCCTGCTGGATTGACGCCCCTTCATGTTGCAGCAAGTATGAATGGTTATGAGACTGTATTGGATGCGTTAACCGATGATCCGGGAATGGTTGGAATTGAAGCATGGAAAAGTGCCAAGGACAATACAGGTTTAACACCCAACGACTATGCATCCCTTAAGGGCCACTATTCCTACATTCAACTTGTGCAGAGAAAAACAACCAAGAACAACCCAACTCAACATGTGGTTGACATCCCAGGCACCCTTGTAGACGGAAACACAAAGAAGCAATTAGACGGACATAAATCATCAAAAGTTTCCAGTTTCAATACAGAAAATATTGCAACAATGCCAAATCATTGCGGGCTTTGCCAACAGAAACTGGCCTACAGCAGCGGCATCGGCGGCACGAGGAGGGCACTTGTCTATAGGCCGGCGATGCTGTCAATGGTCGCGATTGCAGCTGTATGTGTCTGTGTGGCTTTACTCTTCAAAAGCTCCCCAAGAGTTTACTATGTATTCCAGCCTTTCAGCTGGGAATCTTTGGAGTATGGTTCAATGTAA 2946 0.4453 MQGGGFGSGSSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLFPVDPENVDGSNNLVSGEGSRELEKRRRGFFDEGLEVNDDFGSLNLNLGGQVYPIMEGEERSGKKTKITVTTTSNRAVCQVEDCRADLSNAKDYHRRHKVCVVHSKASKALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLLGHNIRRRKVHLDAAGSPIEERGTSYLLPSILRILSNMQSNEADHLGNSDVLSRLLGNLASVTGAVNGRNIASFLEGFQNLVKAGTSGAAQNVPNTNPIGSEAPRPSDSSLKMNNNLIHQDPPESRLQCATVPSNHTAPKCIPSSSVGLPPRPVAVETTAGRNGLINIDLNNVYDDAQDVENPESSRPYVASGVGSHDHPSFVQYESLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDFPDVLRSQILSWLSHSPTEIESYIRPGCIILTICLRLENSAWDELCYNLGSSLRKLLAASNDSIWRIGLIYTRVRNSVAILYNGQVFLDMPLRLGSQENCQILCVKPLAVSASTDVKFSVKGLNLFLNSARILCALEGKYLVEDRCYDLIDGSGAATGHHELQNLSFSCRIPNMSGRGFIEVEDDCLGSCSFPFIVAEPEICSEICNLETVIEAAETADDIQIKAKLMEEKTRAMNFVQEMGWLLHRIRVKYRLGPAAPVQDRFHFNRYTWLVGFSMDHDWCAVMKKLLDIIFEGEVDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPIKASDGGDSKEMQVNKSPDRFLFRPDAVGPAGLTPLHVAASMNGYETVLDALTDDPGMVGIEAWKSAKDNTGLTPNDYASLKGHYSYIQLVQRKTTKNNPTQHVVDIPGTLVDGNTKKQLDGHKSSKVSSFNTENIATMPNHCGLCQQKLAYSSGIGGTRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLEYGSM 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01107 981 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 71 794 IPR044817 GO:0003677
Vivi4g01107 981 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Vivi4g01107 981 MobiDBLite consensus disorder prediction 389 421 - -
Vivi4g01107 981 Pfam SBP domain 121 194 IPR004333 GO:0003677
Vivi4g01107 981 Gene3D - 112 182 IPR036893 GO:0003677|GO:0005634
Vivi4g01107 981 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Vivi4g01107 981 SUPERFAMILY Ankyrin repeat 748 864 IPR036770 -
Vivi4g01107 981 FunFam Squamosa promoter-binding-like protein 14 112 182 - -
Vivi4g01107 981 Gene3D - 733 879 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01107 Vivi-Chr4 34032633 34038339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01107 1 980 SBP-box Gene Family AT3G60030 46.393 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi4g01107 SBP 6.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01107 - - gmx:100792774 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01107 4 34032633 34038339 Vivi4g01107 4 34032633 34038339 ECH
Vivi4g01107 4 34032633 34038339 Vivi4g01107 4 34032633 34038339 PCT