Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01096 ATGGCATCGGATCTGAATTCCGGGCTGTCGAAGAAAACGGTTTTGGGATTGAAAGTATGGGTATTAATGGGAGTTATGGTTGGATTGTTCATTATAATCATTCTCGTTGTGCTATCGGTATGTCTTACTTTAAGAAAAAAATCCAGAAGACGCAGTGGGAGCATGCTTCCTCTTGGCCATATTCTATCTATTTCAGAAGATATTAAAGAAATTAGCGTCGATCAAGTTTCATCAAATAGTCATCCGCGAAACGGAGGTTTTATGAGCTTGAATGACAAGTTTAGTGAAGGCGATTCCGGAAAGGTTTTGATCCAAACAAAGAATGGAGATAATAGCAGTCAATCAGGCTCGTTTAATTGTTTAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGATAGCGGCGGTTTTAGGAGTGTTTCGGTTTATAGATCTTCGTCACATCCTATATCTGCGCCATCGCCTTGTTCTGGGCTTCCTGAATTCTCTCATCTTGGCTGGGGTCACTGGTTTACATTAAGGGACCTTGAACTTGCAACAAACAGGTTTTCGAAAGATAGTATTATCGGTGAAGGTGGTTATGGAATTGTTTATCGAGGTCAACTTATCAACGGGAATCCTGTGGCTGTCAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTTGAAGTCGAGGCTATCGGTCATGTGCGGCATAAGAACTTGGTTCGGCTTTTGGGTTTTTGCATCGAAGGCACTCACAGGTTATTGATTTACGAGTATGTCAACAACGGAAATTTAGAGCAGTGGCTTCATGGAGCCATGCGGCAGCATGGCTATCTTACTTGGGAAGCTCGGGTGAAAATTCTTCTCGGAACAGCCAAAGCGCTAGCTTACTTGCACGAGGCGATCGAGCCAAAAGTTGTACATCGAGATATTAAGTCGAGCAATATTCTAATTGATGATAACTTTAACGCTAAAATATCCGACTTTGGACTTGCTAAATTACTCGGTGCCGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCAGAATACGCCAATTCTGGTTTGTTAAACGAGAAAAGCGATGTTTATAGCTTTGGTGTATTGCTTCTTGAAGCAATTACAGGACGCGATCCAGTCGATTATAGCCGACCGGCAACCGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTAGGGTGTAGGCGGTCCGAAGAAGTGGTGGACCCGAACATTGAAACTAGGCCATCAACGAGTGCTCTAAAACGATCCCTTTTAACCGCTTTAAGATGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGCCAAGTTGTTCGCATGCTTGAGTCAGAAGAATATCCCATACCTCGAGAGGATCGAAGACGGCGAAGGAATCAAGCAGGAAACATAGAGGCAGAGAGCCAGAGGGAGACTTCCGATACAGATAAAAGCGACACTCCAGATTCTAGACAAAATGGCAGAAGGAACTAA 1509 0.4294 MASDLNSGLSKKTVLGLKVWVLMGVMVGLFIIIILVVLSVCLTLRKKSRRRSGSMLPLGHILSISEDIKEISVDQVSSNSHPRNGGFMSLNDKFSEGDSGKVLIQTKNGDNSSQSGSFNCLEKDLNGSQSGEDSGGFRSVSVYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFSKDSIIGEGGYGIVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGYLTWEARVKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDNFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRSLLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRRNQAGNIEAESQRETSDTDKSDTPDSRQNGRRN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01096 502 PANTHER OS01G0323000 PROTEIN 5 485 - -
Vivi4g01096 502 MobiDBLite consensus disorder prediction 439 502 - -
Vivi4g01096 502 Pfam Protein kinase domain 184 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01096 502 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01096 502 CDD STKc_IRAK 189 455 - -
Vivi4g01096 502 ProSiteProfiles Protein kinase domain profile. 183 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01096 502 FunFam Putative receptor-like serine/threonine-protein kinase 259 470 - -
Vivi4g01096 502 FunFam Putative receptor-like protein kinase 165 258 - -
Vivi4g01096 502 SUPERFAMILY Protein kinase-like (PK-like) 167 462 IPR011009 -
Vivi4g01096 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Vivi4g01096 502 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Vivi4g01096 502 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Vivi4g01096 502 Gene3D Transferase(Phosphotransferase) domain 1 259 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01096 Vivi-Chr4 33530096 33533802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01096 16 457 Trihelix Transcription Factor Family AT1G70460 42.188 1.39e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi4g01096 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01096 - - gmx:732653 833.172