Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01045 ATGGATGGTGTCTCTGTCAAGGTTGAGCCTGAGGAGTTTAGGGGTCTAGAATCTTCTCCTGTTGCTGTTGATGGTGTTAGTTCCAACATGGATGATGGGTCAATGGTGAATTCTTCAGCAAACAAGTCGATGGCAGCATCTCGAATGAACGAGGCGTTTCCTAGTACAAATCAGCTTACCATCTTCTATAACGGGAATATCTGTATCTATAACGGAATTCCAGCAGAAAAGATGCAAGAAATAATGCTCATGGCTTCTGCTTCTGCCAAGTCTACGGAAACGAAGAATATTGTGAAACAGTCTCCTGTTCCTTCACCTATGCCCTCAAGGCCCTCTTCTCCACTTGCTGCAACGGATAATATCGCTTCATCGCAGGCACTCTGCTTTCCTGCAAAGAAGAGTTCCGTCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGGTTGGGTAGTAAAGCACCTTATCCGTCTTCGCCGATAACAAAGGTGGCTGACAACATTGAGAACAACTTCTGCTCTGAGAATTCGCCAGATTCGGTTTCGTTGAAGGGGCCAAACGAAGAATTTCAGCCAACTATATCTGCCTCTTGA 627 0.4577 MDGVSVKVEPEEFRGLESSPVAVDGVSSNMDDGSMVNSSANKSMAASRMNEAFPSTNQLTIFYNGNICIYNGIPAEKMQEIMLMASASAKSTETKNIVKQSPVPSPMPSRPSSPLAATDNIASSQALCFPAKKSSVCRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPSSPITKVADNIENNFCSENSPDSVSLKGPNEEFQPTISAS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01045 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 39 175 IPR040390 -
Vivi4g01045 208 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
Vivi4g01045 208 MobiDBLite consensus disorder prediction 186 208 - -
Vivi4g01045 208 Pfam tify domain 54 86 IPR010399 -
Vivi4g01045 208 SMART tify_2 52 87 IPR010399 -
Vivi4g01045 208 Pfam Jas motif 143 167 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01045 Vivi-Chr4 31112233 31114591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01045 24 174 Tify Gene Family AT5G20900 45.455 3.95e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g01045 tify 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01045 K13464 - gmx:100306045 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00870 1 18664682 18666481 Vivi4g01045 4 31112233 31114591 PCT