Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01043 ATGACAATTTCTGAGTGGTCTCAACTTCTGTTCCTTTGCATCATAACATCCTCACCCCTCTTCCTTAGCAACATCAATGTCGCATTTGCAACAGACCCATTTGTCCAACAAGAGAAAGACAGGATTTTTAGCGCACTCCCAGGTCAAAACTTCAACATAACCTTCAAACACTATTCTGGGTATATCACAGTCAATGAGGAAGTTGGAAGGACACTGTTTTACTGGTTCATTGAAGCTGATCATCCAGATCCCACTTCAAAGCCTATTCTTTTATGGTTCAATGGTGGTCCTGGCTGTTCTTCTATAGCTTATGGAGAAGCTGAGGAAATTGGTCCTTTTCGGATTAAGCCAGATGGCAAAACCCTTTATCTTAATCCTTATTCTTGGAATCAAGTTGCCAATATTCTTTTTATTGACTCTCCTGTTGGAGTTGGATTTTCTTATTCAAATGATTCATCTGATATTCTCAACAATGGAGATAAGAGGACAGCTGAGGAAAATCTCATATTCCTATTGAAATGGTTTAAGCGTTTTCCCCAGTTTAGAAAAACAGACTTTTTCATCAGTGGTGAGAGCTATGCAGGACATTATGTTCCCCAACTTAGCCAACTTATTGTCAAGTATAACTCGGCTACAAAACAAGATTCTATAAACTTCAAAGGTTACATGGTAGGAAATGCTCTATTAGATGATTTCCATGATCAATTGGGGATGTTCCAATTTTGGTGGTCAAGTGGTATGATTTCGGATCGAACATTCAGGCTCTTGAACCTTCTATGTGATTTTCAGTCAGTCGAACACCCGTCAAAGTCATGTGATAAAATGTATGATCTTGCCTATGAAGAACTTGGTAATATCGACCCATACAGTATCTTTACCGCTACTTGCCACGCTAATGATAATCAGCGGATTAAAAGAAGGCTTTTAAGAAAGAATAGTGCAGGAAGACTCAGAAGTGCGTATGATCCTTGCACCGAGAAGCACAGCACCATATACTTCAATCAACCCGAGGTCCAAAGAATTCTACATGTTGATCCAAATCACAAGCCGGAAAAATGGCAGACTTGCAGTGATGTGGTATTTACTAACTGGAAGGATTCTTCTAGAAGCGTTCTCAATATATATCGTGAACTTATTCCTACCGGACTGCGAGTATGGATATTCAGTGGTAATACAGATGCCATTCTCCCGGTAACATCTACTCGCTATTCCATAAATGCTCTCAAGCTTCCAACTGCGAGCCCCTGGCGTGCATGGTATGATGACGGAGAGGTAGGAGGATGGACGCAAGAATACACGGGACTCACATTTGTAACTGTAAGGGGTGCTGGGCACGAAGTTCCTCTGCATAGACCGAAACTTGCTCTTACATTGTTCAAATCCTTTTTAGCAGGAACCTCCATGCCAACTCTTGAACCAGTCACACTCACGGCCGCCTATTGA 1443 0.4137 MTISEWSQLLFLCIITSSPLFLSNINVAFATDPFVQQEKDRIFSALPGQNFNITFKHYSGYITVNEEVGRTLFYWFIEADHPDPTSKPILLWFNGGPGCSSIAYGEAEEIGPFRIKPDGKTLYLNPYSWNQVANILFIDSPVGVGFSYSNDSSDILNNGDKRTAEENLIFLLKWFKRFPQFRKTDFFISGESYAGHYVPQLSQLIVKYNSATKQDSINFKGYMVGNALLDDFHDQLGMFQFWWSSGMISDRTFRLLNLLCDFQSVEHPSKSCDKMYDLAYEELGNIDPYSIFTATCHANDNQRIKRRLLRKNSAGRLRSAYDPCTEKHSTIYFNQPEVQRILHVDPNHKPEKWQTCSDVVFTNWKDSSRSVLNIYRELIPTGLRVWIFSGNTDAILPVTSTRYSINALKLPTASPWRAWYDDGEVGGWTQEYTGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMPTLEPVTLTAAY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01043 480 Gene3D - 324 362 - -
Vivi4g01043 480 Pfam Serine carboxypeptidase 47 464 IPR001563 GO:0004185|GO:0006508
Vivi4g01043 480 SUPERFAMILY alpha/beta-Hydrolases 44 468 IPR029058 -
Vivi4g01043 480 ProSitePatterns Serine carboxypeptidases, histidine active site. 435 452 IPR033124 GO:0004185
Vivi4g01043 480 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Vivi4g01043 480 Gene3D - 371 465 - -
Vivi4g01043 480 Gene3D alpha/beta hydrolase 37 298 IPR029058 -
Vivi4g01043 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Vivi4g01043 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Vivi4g01043 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Vivi4g01043 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Vivi4g01043 480 FunFam Carboxypeptidase 36 298 - -
Vivi4g01043 480 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 452 IPR001563 GO:0004185|GO:0006508
Vivi4g01043 480 FunFam Carboxypeptidase 371 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01043 Vivi-Chr4 30894424 30897533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01043 352 468 Calmodulin-binding Proteins AT2G22960 25.424 3.58e-09 54.7