Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01042 ATGAGAATGGCAAATTCTAATTGGTCTCAACTCTTGCTCTTTTGCATCCTAACATTGTCATCCCTTTTCCTAAGCAACATCAATGTTGCATTTGCAACAAACCCATTTGTCCAACAAAAGAAAGACAGGATTTTTAAGGCACTCCCGGGTCAAAACTTCAACATAACCTTCAAACACTATTCTGGGTATATTACAGTCAACGAGGAAGTTGGTAGGACACTCTTTTACTGGTTCATTGAAGCAGATCATATAGATCCTACCTCAAAGCCTCTTCTTTTATGGTTCAATGGTGGTCCTGGTTGTTCTTCTATAGCTTATGGAGAAGCTGTGGAAATTGGTCCTTTTCATATTAACTCAGATGGCAAAACCCTTTATCTTAATCCTTATTCTTGGAATCAAGTTGCCAATATTCTTTATATTGACTCTCCTGTTGGAGTTGGATTTTCTTATTCAAATAATTCAACTGATATTTTCAACAATGGAGATAAGAGGACAGCTGAGGACAATCTCATATTTCTATTGAAGTGGTTTAAGCGTTTTCCCCAGTATAAAAAAACAGACTTTTTCATCAGTGGCGAGAGCTATGCAGGACATTATGTTCCCCAACTTAGCCAACTTATTGTCAAGTACAACTCAGCTACAAAACAAGATTCTATAAACTTCAAAGGTTACATGGTAGGAAATGCTCTATTAGATGATTTCTATGATCAATTGGGGATATTCCAGTTTATGTGGTCAAGTGGTATGATTTCGGATCAAACATTCAAGCTCTTAAACCTTCTATGTGATTTTCAGTCAATCAGACACCCGTCAGAGTCATGTGAAAAAACTTTGGAAATCGCCTATGAAGAACTTGGTAATATAGACCCATACAGTATCTTTACCTCTACTTGCCATGCTAACCATAATCAGCACGTTAAAAGAAAGCTTAGTGCAGGAAGACTCAGAAGTGCGTATGATCCTTGCACCGCGAAGCACAGCACTATATACTTCAATCAACCCGAGGTCCAAAGAATTCTACATATTGATCCAAATCACAAGCCGGAAAAATGGCAGACTTGCAGCAAAATGGTAGGTATTAACTGGAAGGATTCGCCTAGAACAGTTCTTAATATATATCGTGAACTTATTCCTACCGGACTGCGAATATGGATATTCAGTGGTAATACAGATGCTGTTCTCCCGGTAACATCTACTCGCTATTCCATAAATGCTCTCAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGATGACGGAGAGGTTGGAGGATGGACGCAAGAATACGCCGGACTCATGTTTGTAACTGTAAGGGGTGCCGGGCACCAAGTTCCTCTGCATAGACCGAAACTTGCTCTAACATTGTTCAAATCCTTTTTAGCAGGAACCTCCATGCCAACTTTCGAACCGGTCACACTCACGACCGCCTAA 1434 0.4017 MRMANSNWSQLLLFCILTLSSLFLSNINVAFATNPFVQQKKDRIFKALPGQNFNITFKHYSGYITVNEEVGRTLFYWFIEADHIDPTSKPLLLWFNGGPGCSSIAYGEAVEIGPFHINSDGKTLYLNPYSWNQVANILYIDSPVGVGFSYSNNSTDIFNNGDKRTAEDNLIFLLKWFKRFPQYKKTDFFISGESYAGHYVPQLSQLIVKYNSATKQDSINFKGYMVGNALLDDFYDQLGIFQFMWSSGMISDQTFKLLNLLCDFQSIRHPSESCEKTLEIAYEELGNIDPYSIFTSTCHANHNQHVKRKLSAGRLRSAYDPCTAKHSTIYFNQPEVQRILHIDPNHKPEKWQTCSKMVGINWKDSPRTVLNIYRELIPTGLRIWIFSGNTDAVLPVTSTRYSINALKLPTVSPWRAWYDDGEVGGWTQEYAGLMFVTVRGAGHQVPLHRPKLALTLFKSFLAGTSMPTFEPVTLTTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01042 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 45 450 IPR001563 GO:0004185|GO:0006508
Vivi4g01042 477 SUPERFAMILY alpha/beta-Hydrolases 42 466 IPR029058 -
Vivi4g01042 477 Gene3D alpha/beta hydrolase 39 300 IPR029058 -
Vivi4g01042 477 Gene3D - 322 358 - -
Vivi4g01042 477 FunFam Carboxypeptidase 319 466 - -
Vivi4g01042 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Vivi4g01042 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vivi4g01042 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Vivi4g01042 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Vivi4g01042 477 FunFam Carboxypeptidase 38 300 - -
Vivi4g01042 477 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Vivi4g01042 477 ProSitePatterns Serine carboxypeptidases, serine active site. 190 197 IPR018202 GO:0004185
Vivi4g01042 477 Pfam Serine carboxypeptidase 49 462 IPR001563 GO:0004185|GO:0006508
Vivi4g01042 477 Gene3D - 369 463 - -
Vivi4g01042 477 FunFam Carboxypeptidase 369 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01042 Vivi-Chr4 30850112 30853378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01042 350 466 Calmodulin-binding Proteins AT2G22960 26.271 9.16e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01042 K16297 - gmx:100805227 707.983