Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01038 ATGCAATCTTTGGTTTCATCAAAGTTTCTTGTGCTTGTTGGAGAATCATTCCCTATGAGAAGGGCTTTATTGAATCCTAAGTTTGCTTGGTTCCATAGTAGTAGTGTTAGGTGTATGGCCCATGTAGAACCCAATCATAGTTCTCTCACTCTTTCAAGCCTTGGTTTTGAAACTGAAACTGAAATTGAGCCTAAGATTAGACCTAAATCAAAAATTGTTAAGCCATTACGTTCAACTTCATCTGAGGGTTTTAAGAATAAAAGAAAACCCTTTGGAAATAGGGTTTTGAATAAGAAAGAAATAGAGTCTGCCCCTTTTGCGGCGAAGTCGTTTTCGGAACTCGGTGTTCCGGAGGTTTTGATTGAGAGGTTAGGAAAAGAGGGTTTTAATGTTCCGACCGAGGTTCAGTCTGCTGCGGTTCCAACTATTTTGAAGAACCGGGATGTTATTATTCAGTCGTATACGGGTTCGGGGAAGACTTTGGCTTATTTGCTTCCTATATTGTCGGTTATCGGGCCGTTGAGAGGTGAGAATTGTGAGGGTGATGGTAGTGGTGACGGTGGTGAGACCGGGAAGAAATTGGGTGTTGAAGCGGTGATTGTTGCTCCGTCTAGGGAGCTTGGAATGCAGATAGTAAGGGAGTTTGAGAGGATATTGGGAATGGATAACAAGAAAATGGTTCAGCAGCTTGTGGGAGGTGCGAACCGGTCCAGGCAGGAAGAGGCTTTGAAGAAAAATAAGCCTGCCATTGTTGTTGGTACGCCGGGTAGGATAGCCGAGCTAAGTGCGAGCGGGAAGCTTCGTACACATGGCTGTCGGTATTTGGTATTGGATGAAGTTGATGAGCTTCTTTCGTTCAATTTCCGGGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCGGGTGCAGACCTAAACTCAAATGCGAAAAAGACCGAGCGTCAGTTAATTATGGTTTCCGCAACTGTTCCGTTTTCGGTTGTAAGGGCAGCTAAGAGCTGGGGTTGTGATCCACTTCTTGTTCAAGCTAAGAAAATTGTACCGCTTGAAACTTTGTCTCCTGAGCCGGTCAATTTATCGCCGAGCTCGAATACTACCTCGTCTACACCATCTAAGGCTGTAGTCGAGAGTCTCCCTCCAGCATTGAAACACTATTATTGTGTAGTGAGATTGCAACACAAAGTCGATACGTTGAGAAGGTGTATTCATGCGCTGGATGCGAAATTCGTAATTGTTTTCATGAATCACACTAAGCAGCTAAAGGATGTTGTCTACAAACTAGAAGCCCGCGACGTGAAAGCCGCGGAGTTACACGGAGATCTCGGGAAGCTCGGTAGGTCGACAACTCTAAAGAAGTTCAAGAACGGTGAGGTTAGAGTTCTTGTGACAAATGAGTTATCAGCAAGAGGTTTGGATGTAGCGGAATGTGATCTTGTGGTTAACCTCGAATTGCCAACAGATTCGATTCACTATGCACATCGAGCCGGCCGAACCGGTCGGCTTGGTAGGAACGGTACGGTGCTAACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAACTGAAGAAGCAACTTGAAATACCGATAGCGTGCTGTAATTTTGTCGAAGGAAAGCTTGTTATCACGGAAGAAGAAGAGCATACACTAAGCGGCACTTCTTGA 1671 0.4488 MQSLVSSKFLVLVGESFPMRRALLNPKFAWFHSSSVRCMAHVEPNHSSLTLSSLGFETETEIEPKIRPKSKIVKPLRSTSSEGFKNKRKPFGNRVLNKKEIESAPFAAKSFSELGVPEVLIERLGKEGFNVPTEVQSAAVPTILKNRDVIIQSYTGSGKTLAYLLPILSVIGPLRGENCEGDGSGDGGETGKKLGVEAVIVAPSRELGMQIVREFERILGMDNKKMVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADLNSNAKKTERQLIMVSATVPFSVVRAAKSWGCDPLLVQAKKIVPLETLSPEPVNLSPSSNTTSSTPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVYKLEARDVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLKKQLEIPIACCNFVEGKLVITEEEEHTLSGTS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01038 556 Gene3D - 74 345 IPR027417 -
Vivi4g01038 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Vivi4g01038 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 525 IPR027417 -
Vivi4g01038 556 Gene3D - 381 537 IPR027417 -
Vivi4g01038 556 SMART helicmild6 423 504 IPR001650 -
Vivi4g01038 556 Pfam DEAD/DEAH box helicase 133 329 IPR011545 GO:0003676|GO:0005524
Vivi4g01038 556 CDD SF2_C_DEAD 384 513 - -
Vivi4g01038 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Vivi4g01038 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 82 542 - -
Vivi4g01038 556 SMART ultradead3 128 362 IPR014001 -
Vivi4g01038 556 CDD DEADc 120 344 - -
Vivi4g01038 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 343 IPR014001 -
Vivi4g01038 556 Pfam Helicase conserved C-terminal domain 399 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01038 Vivi-Chr4 30522207 30524447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01038 110 538 Eukaryotic Initiation Factors Gene Family AT3G19760 25.747 2.40e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01038 - - gmx:100790663 821.617