Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01002 ATGGCTCCAATGTCTCTACCACCTGGTTTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTACTATTTAGAGAGAAAAATAACAGGTAGAATCATTGAGCTTGACATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTGCCAGAAAAGTCATTTCTTCCAAGCAAGGATATGGAGTGGTATTTTTACAGTCCAAGAGACAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACAGGAAAAGATAGAGCAGTGAATTCTCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGAATTAGAACCAACTGGGTTATGCATGAATATCGTCTTAATGAATCACACCCCGGTGCTTCTCTCTCTTCTTTGAAGGATTCATATTCGTTGTGTCGAATTTTCAAGAAGACAATTCAAATTTCGACAAAACCTAATGAAGAAGAACAAGCTGAAGATACAAAGAAGGAAATAATGATGCAAGGGGAAGACTCAAGTGGAAATGAGATAATGGAAACTATGGATGAAAAAGTTATTAATAATAATAATAATAATGAATATCCAAAATTTCCATGTGACGCTTCATCTTCTGATGTCACTCAAGGAACATGCACACCAACAGAAACATGCAATAACAACAATATAACAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGCTCAACTATTTCTTATCCTATTGGAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCCATAATCAATTTCCCCAAACACCTTTTATGATGGAAGATTTTCCACAAATGGAGACAAAATCAATATTGAAGCCAGATATGAGTGAAAACTGCTTTCTATATGACAAATACATAGACTGTATGAATGGAACACTAGAAGAAATCATTTCCTTGTGTTCCTCTCAAGATCATTCTGTGGCTTTTCCAATGCTATAG 1011 0.3581 MAPMSLPPGFRFHPTDEELVAYYLERKITGRIIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLNESHPGASLSSLKDSYSLCRIFKKTIQISTKPNEEEQAEDTKKEIMMQGEDSSGNEIMETMDEKVINNNNNNEYPKFPCDASSSDVTQGTCTPTETCNNNNITDDFHAQFACDEANSSTISYPIGNLFQDIEIPMYGGFHNQFPQTPFMMEDFPQMETKSILKPDMSENCFLYDKYIDCMNGTLEEIISLCSSQDHSVAFPML 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01002 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 215 - -
Vivi4g01002 336 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vivi4g01002 336 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vivi4g01002 336 FunFam Nac domain-containing protein 86 15 160 - -
Vivi4g01002 336 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vivi4g01002 336 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01002 Vivi-Chr4 28948639 28952391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01002 1 322 NAC Transcription Factor Family AT1G54330 52.147 3.64e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g01002 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01002 - - gmx:100808325 514.998