Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00999 ATGGGCCATCGTTGTTGCAGCAAACAGAAGATCAAAAGAGGATTATGGTCTCCTGAAGAAGATGATAAGCTTGTTGCATATATCACTACTCATGGACATAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGTCTTCAGAGATGTGGAAAGAGTTGCAGATTAAGATGGACGAACTATTTGAGACCAGATCTAAAACGAGGTTCCTTCACTGTAGAAGAAGAACATATCATAATCGACATACATAGAATTCTCGGAAACAGATGGGCCCAAATAGCAAAGCACCTTCCTGGTAGAACTGACAATGAAGTGAAGAATTTTTGGAACTCATGCATCAAAAAGAAGCTCATTTCACAAGGCTTAGATCCACAAACTCACAATTTACTTTCTTCTCATAAAAGAAACAACTCATCATATCAAAACTCCAATTCCATTTTCATTCTCACTTCACAAATGCCACCAAATGCTAACTATCATATTGAAACAACAAATCAAACTTTTTCACCACCAAATATTATTCAAACTCCTTCTACAATTGTTTCCACAAACCAATATCAAACATCTTTCAATGTAATTTCAAATCAACTATGTCTTCCCGAGCAAGAACAGGCTCGAATAATAACCGAGAACATATCGAACGTTTGTTCTTCATCCGGCCTAGACACTACTGTTGTTGAAAATGAAATATCTAAGAATAAGAATGGCATTTGGGTTTCAAGAGATGAAGAAGGAACACAAGCTAGAGTGGAGGAAGAGAAGGAGAAGATGTGTGAGAAAGGAATGGATTTAAGTGAAATTGAAATGAATGGTTTTTTTGAGAATTCTAAGTTTGATTTTGGGTTGTTGGAGAGTGTACTTAACTCTGAATTTATATCTCATGATCTAGATTATATGGATGTACTTGCATGGAATTTTTAA 915 0.3585 MGHRCCSKQKIKRGLWSPEEDDKLVAYITTHGHKSWSSVPKFAGLQRCGKSCRLRWTNYLRPDLKRGSFTVEEEHIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHKRNNSSYQNSNSIFILTSQMPPNANYHIETTNQTFSPPNIIQTPSTIVSTNQYQTSFNVISNQLCLPEQEQARIITENISNVCSSSGLDTTVVENEISKNKNGIWVSRDEEGTQARVEEEKEKMCEKGMDLSEIEMNGFFENSKFDFGLLESVLNSEFISHDLDYMDVLAWNF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00999 304 FunFam MYB transcription factor 5 65 - -
Vivi4g00999 304 CDD SANT 68 108 IPR001005 -
Vivi4g00999 304 FunFam Transcription factor MYB86 67 142 - -
Vivi4g00999 304 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vivi4g00999 304 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vivi4g00999 304 PANTHER MYB DOMAIN PROTEIN 55 1 231 - -
Vivi4g00999 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vivi4g00999 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vivi4g00999 304 CDD SANT 16 60 IPR001005 -
Vivi4g00999 304 SMART sant 65 113 IPR001005 -
Vivi4g00999 304 SMART sant 12 62 IPR001005 -
Vivi4g00999 304 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vivi4g00999 304 Gene3D - 68 143 - -
Vivi4g00999 304 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vivi4g00999 304 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vivi4g00999 304 Gene3D - 10 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00999 Vivi-Chr4 28900643 28902175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00999 1 304 MYB Transcription Factor Family AT3G12720 49.351 5.81e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g00999 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00999 K09422 - gmx:100791209 374.015