Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00992 ATGGAAAGAATGTTCCCTACAAAGAAGCCTTCAACTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCAGGTCTTGTTCTTACCACCGACCCGAAACCTCGTCTTCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAACTTGGAGGACCTGACAAGGCCACTCCTAAAACTATTATGAGGGTTATGGGTGTCAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTAGGAAAGCAACCCCACAAAGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTCAGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATTGAGGTGCAAAGAAGGCTTCATGAACAGCTTGAGGTGCAAAAACATCTTCAACTAAGGATTGAAGCTCAAGGAAAATACATGCAAAGTATATTAGAGAAGGCTTATCAAACCCTTGCTGGTGAAAACATGGCAACAGCTACAACTAACCTAAAGGGTGTAGTTATTGGACCTCAAGGGATTCCAGAAATGGGACTATTGAAAGAATTTGGTTCACCTCTTAGTTTCTCATCTTTTCAAGATCTCGACCTTTTCGGAAACAACGGCGGCGGCGATCAACTCGACCTTCAACAAAACATGGAAAAACAAACCCTAGATCATCATGGATTCATCCAAATCAATGATAACCTATGTCTTGGCAAGAAGAGGCCAAACCCTAACACTAACCCTTACAATGGAAATGGAAAGAGTCCTTTAATGTGGAGTGATGATTTAAGGCTTCAAGACTTAGGACCAGCTTCATCATGCTTGGATGATCCTTTCAAAGGTGATCAAATTCAAATCCAAATTGCACCACCATCATTGGATAGAGGAAACGATATCGAAACTATCGATATTTACGATACAAAGCCTTTACTTCAAGGAGAGATTCTAGGCGAAAAGAAATTCGACGCATCGATGAATACTAAACTCGAAAGGCCATCACCAAGAAGAGGCCAACAACAACAGCTTCATGCTGAAAGAATGAATAATCCTATGATTAGTACTGGCATCATGGCACAAGGTAGAGGATCACCATTTGGATGA 1143 0.4138 MERMFPTKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMATATTNLKGVVIGPQGIPEMGLLKEFGSPLSFSSFQDLDLFGNNGGGDQLDLQQNMEKQTLDHHGFIQINDNLCLGKKRPNPNTNPYNGNGKSPLMWSDDLRLQDLGPASSCLDDPFKGDQIQIQIAPPSLDRGNDIETIDIYDTKPLLQGEILGEKKFDASMNTKLERPSPRRGQQQQLHAERMNNPMISTGIMAQGRGSPFG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00992 380 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Vivi4g00992 380 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g00992 380 FunFam Myb family transcription factor 34 92 - -
Vivi4g00992 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Vivi4g00992 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 185 IPR044848 GO:0003700
Vivi4g00992 380 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Vivi4g00992 380 Gene3D - 34 92 - -
Vivi4g00992 380 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Vivi4g00992 380 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00992 Vivi-Chr4 28480872 28483560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00992 4 380 G2-like Transcription Factor Family AT1G79430 57.772 1.11e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g00992 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00992 - - gmx:100807793 575.859