Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00978 ATGATGGCAGCACTGAAATTCGGTGGCAACATGTACACGGCACTCCGATCATCGAAGCATCTCTATCGCTCTTCCTCTTCCCATCTTCTCTCCGCTAAGTTTCTCATGCAAATTCCTTTCACTCGCAAGATGAGTGTAGATGCTCGGAGTATTGCTTCCCAGCTTAACAGTTCTGGGCTGTTGAGAACACAGGGCCTCATTGGAGGGAAATGGAGGGATGCTTATGATGGGAAAACCATAAAGGTTATTAATCCAGCTACTGGTGAATCTATAGCAGATGTAGCATGCATGGGTGGAAGGGAAACAAATGATGCAATTTCCTCTGCTTTTGATGCTTTTAAATCATGGAGTAAAATCACTGCTGCTGAGCGAAGCAAATATCTGAGGAAATGGTATGATTTGCTCATGGCACATCAAGAAAAGTTAGCACAACTTATTACCTTGGAGCAAGGAAAGCCTCTTAAAGAGTCTATGGGTGAGATAAGTTACGGTGCTGGGTTTATTGAGTTTGCATCAGAGGAGGCAAAGCGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGAGGTTATTTGTTTTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCATGGAACTTTCCCCTTGCTATGATTACCCGAAAGGTTGGTCCAGCCCTTGCATGTGGGTGTACAGTTGTCATAAAGCCCTCTGAACTTACGCCTCTGACTGCTTTAGCTGCAGCAGAACTTTCTATTCAAGCTGGAATACCTGCGGGTGTTGTGAATGTGGTTATGGGAAATGCTCCTGATATTGGAGACGCCTTACTAGCAAGTCAACAGGTTAGGAAGATTACATTCACTGGCTCAACGGCTGTTGGAAAGAAATTGATGGCAGGTTCTGCTGAGACGGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCGCCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTGAAAGGAACGCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGACAAGTTTGCAAATGCATTGCTTGATGCTGTTCAGAGTATGAAAGTTGGAGATGGTTTTAGTGAAGGAGTGGCTCAGGGCCCTCTGATAAATGAAGCTGCTGTCAAAAAGGTTGACTCCTTGATTCAAGATGCTACAACAAAGGGGGCAAAAGTTATTCTTGGGGGTAAAAGGCATAGCCTTGGATCAACTTTTTATGAACCAACAATCATCAGTGATGTCAACAATGAGATGCGTATATCAAGAGAGGAAGCATTTGGACCTGTTGCCCCCCTTTTGCGATTCAAAACTGAAGAGGACGCCATCAAAATTGCTAACGACACTAATGCAGGCTTGGGTTCATACGTATTTACAAACAGTATCCAACGATCATGGCGCGTGGCTGAAGCTCTTGAATATGGACTTGTAGGAGTTAATGAAGGAGTAATTTCAACAGAGGTGGCTCCATTTGGTGGAGTTAAACAGTCTGGCCTCGGAAGAGAAGGTTCCAAATATGGGATGGATGAATATTTGGAGATCAAGTATGTCTGCATGGGAAACATGAACAAAGATTGA 1617 0.4354 MMAALKFGGNMYTALRSSKHLYRSSSSHLLSAKFLMQIPFTRKMSVDARSIASQLNSSGLLRTQGLIGGKWRDAYDGKTIKVINPATGESIADVACMGGRETNDAISSAFDAFKSWSKITAAERSKYLRKWYDLLMAHQEKLAQLITLEQGKPLKESMGEISYGAGFIEFASEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDALLASQQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRILVQEGIYDKFANALLDAVQSMKVGDGFSEGVAQGPLINEAAVKKVDSLIQDATTKGAKVILGGKRHSLGSTFYEPTIISDVNNEMRISREEAFGPVAPLLRFKTEEDAIKIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCMGNMNKD 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00978 538 Pfam Aldehyde dehydrogenase family 71 530 IPR015590 GO:0016491
Vivi4g00978 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Vivi4g00978 538 SUPERFAMILY ALDH-like 59 536 IPR016161 GO:0016491
Vivi4g00978 538 FunFam Succinate-semialdehyde dehydrogenase I 77 322 - -
Vivi4g00978 538 FunFam Succinate-semialdehyde dehydrogenase I 310 499 - -
Vivi4g00978 538 CDD ALDH_F5_SSADH_GabD 82 532 - -
Vivi4g00978 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 524 IPR016162 GO:0016491
Vivi4g00978 538 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 57 535 - -
Vivi4g00978 538 FunFam Aldehyde dehydrogenase, putative 502 528 - -
Vivi4g00978 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Vivi4g00978 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Vivi4g00978 538 NCBIfam succinate-semialdehyde dehydrogenase 82 528 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00978 Vivi-Chr4 28039023 28053822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00978 26 537 Aldehyde Dehydrogenase Gene Family AT1G79440 77.930 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00978 K17761 - gmx:100808318 911.753