Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00924 ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAGTAATGCAGGACCATATGAATGAAGTTTATCCGAGTAGAAGACCGTATGACCTCAATGCATCAGAAGCTAAACCTGTACATCATTTCTCGATACAGACGGGCGAGGAATTCGCTCTTGAGTTTATGAGAGATAGGTCGAATCCCGGGAAGCCTGTGTTTACGAATGTCGGTGATCCGAATTATACCACAGGGTATATGGAACTGAAAGGAATTTTAGGCATCAGTCACGCAGGATCTGAAACTGGATCAGACATTTCCATGCTATCAATGATGGAGAAATATCCTAAAGAGTTTGATAGAACGAACACGTCGTTTCTTGGAGACAGAAGCAACTATGGATCAATTCGATCGATACCAAGAACGTCAATGAATCAGGACAACAGGCAGTTTGTCCAAGGATATGGCTCTTCTGAGAGTTACTATAACTCATCGACGATGATGAAGTTTCTTTGCAGCTTCGGCGGTAGAATATTACCGCGACCATCTGATGGAAAGCTAAGGTATGTAGGAGGCCATACACGGATTCTCCGTTTAAGAAAGGACGTATCTTATCACGAGCTCATTCAGAAAGCGTTGCTAATATATAACCAGGTTCATACAATTAAGTACCAGCTTCCCGGGGAAGAACTCGATGCTTTGGTATCTGTGTCATCCGACGAGGATTTGCAGAATATGATGGAAGAATGTAATCATCTAGAAGATAGAGAAGGATCACAGAAGCTTAGGATGTTTTTGTTCTCTATCAGTGACTTAGAGGATGCTCAGTTTGGTCTCACCTCGATGGGCGATGATTCTGAAATCCAGTATGTTATTGCTGTTAATGGCATGGACTTGGAATCGAGAAAAAACTCAACTATGGCCGGTTTCAGCTATTCTGCAAACGATGTAAATGAATTGGGCGGGCAAAATATTGACAGGCAGGGCAGTGCTCCCTTGACAAACAATTTTGACTCATCGTTGCCTACTCATTTTTCTCAACCAGGGCTACCAGCTTCCTCAAATTCTTACGAAATGTATCCGATGTTTTACCCTGATCAAATGATGCACCACGGTGAACCGAATGGTCATGGTCATGGTCATGGTCATGGTCAATATCTTATGCATCATGGCGTTGTTAATCCTTCTTATAAACCTTTTATTGAAGAGAGTCCTATTAATATGATGCCTTATATGCCGAATATTCAACAAGGGGTTTTAAATGAAGGTCACCCACCTAGTGGATTACAAGTACAAAATTCAGAAACACTATCCCCGTCTCCTTCCCAACTGTTTGACGGTTACTCACAAAATGATTTTTCGGAAGCATCGGCTGTAGTTACTGCGCCAGAGGGACATTCATTGCCTCCAAGAACGAACCAGCTCCAGGATTATGACGAATCTTCTTCTACTTCCGGTGCTCCTTATGCTGATTCCCGGTCCAATGCAGTTGACTTAAGTTGTCTTCACCCTCCTCCTCTTCCTAAAAGAGTCTATTATTCAGAAAGAGCTCCAAGGAAGCAAGTGGAATCGCTGAATCGGTCTTCAAAGTCGGATGATGCGCAGAATTCTCAGTTTCACGTTTCAGATTTACTTTCTAGGGTCAACTCACAGGATTCAGCTATAGACTCTGGAAACAACTTGCATGACGGAAATCTGTCGAATCTAGCTGAGGAATTGAACATCACATCGAAGCCTTTGCATACAGATGGAAAAGGAACTGAAGATATCTTAAATAAGGACAATGCTGTTACGTTGGAAACAGAAAACCATAAAAAATCTCCGCTTGAAGGTAAATCAGATATCTCTGCTCGGTATCATGATCCAGCTGCCAATCTTCCCGATGTTGATTGGGGTGAGACCTCTGTGAAAGAATCAAATGACGATTTTAACAATCAAGCACTACCCGTTCCTTTGAACGCAAACGCAACTGCAAAAGTTGATTCGCAAGCACAAGGTGACATTCTCATTGATATCAATGATAGATTCCCCCGCGAGTTGCTTAACGATATCTTCTCCAAAGCAATACTAGAAGAAGATTCCTCTAGTCAACATCCATTAGCTTCTGATGGAATCGGTTTAAGCATAAACATGGAGAATCACGAACCTAGAAGTTGGTCATATTTTCAAAAATTAGCGCAGGACGGGATTGATAACGATAACGCATCTCTTATTGATCAGGATCATCTTGGTTTTTCACCTGCTATAGTTGGAGATAATAGAGCTCAACACGTTACACCTTTAACAACTGATGAAGTTCCTCTAAACCGTGCAGAATTCCATCTCAATTTTGGCGATGAAATTCAGAAAGACTTGCATGGAGAAAACGGAACCGAAATTACTGGTCTGAAAACAAATTATGATCCGTCCCAAATTAATGACACTGAAAGTATGCAATTCGATGCTATGTTGGATAACCTAAGAGCACAAGAGTCACACTATGAGGTTGAGAAGTTTGAAAAGAAAAATAACAGTCTACCTCCTCTTGATCCTTCTTTAGAAGAATTTGATATGAATACATTGCAGGTCATAATGAATGAAGATCTTGAGGAGCTGAAGGAACTAGGTTCTGGTACCTTCGGAACTGTATATCATGGAAAATGGCGAGGAACAGATGTTGCCATTAAGAGAATAAAGAAAACTTGCTTCACCGGTCGGTCGTCTGAGCAAGAGAGATTGACTGTTGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCACCATCCGAATGTGGTGGCATTTTATGGCGTGGTGCAGAATGGACCGGGAGGAACAATGGCAACTGTTACGGAGTATATGGTTGATGGTTCTCTTAGGCATGTATTGCTTCGCAAGGATAGGCAGCTCGATCGTCGCAAGAGACTGATAATTGCAATGGATGCAGCTTTTGGAATGGAGTATTTGCATTCGAAAAACATTGTGCATTTCGACTTAAAATGCGACAATTTACTTGTAAACTTAAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCGAAAATTAAACGAAATACCTTAGTTTCCGGTGGGGTGCGGGGCACTCTACCGTGGATGGCACCGGAACTGCTGAATGGTAGCAGCAGCAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTACTATGGGAGATTCTTACGGGCGAGGAGCCATACGCAAATATGCACTACGGTGCAATCATAGGTGGAATTGTTAACAACACACTAAGACCAACAATTCCGAATTATTGTGATCTTGAATGGAGGACACTGATGGAGCAATGCTGGGCCCCAAATCCAGCAGCTAGGCCATCCTTCACAGAAATAGCGAGTCGTTTGCGTATTATGTCATCGACGGCTAGCCAGGCCAAATCACCAGGCCACAAGGCATCCAAATGA 3411 0.4248 MDPRNEYQPGSQSVMQDHMNEVYPSRRPYDLNASEAKPVHHFSIQTGEEFALEFMRDRSNPGKPVFTNVGDPNYTTGYMELKGILGISHAGSETGSDISMLSMMEKYPKEFDRTNTSFLGDRSNYGSIRSIPRTSMNQDNRQFVQGYGSSESYYNSSTMMKFLCSFGGRILPRPSDGKLRYVGGHTRILRLRKDVSYHELIQKALLIYNQVHTIKYQLPGEELDALVSVSSDEDLQNMMEECNHLEDREGSQKLRMFLFSISDLEDAQFGLTSMGDDSEIQYVIAVNGMDLESRKNSTMAGFSYSANDVNELGGQNIDRQGSAPLTNNFDSSLPTHFSQPGLPASSNSYEMYPMFYPDQMMHHGEPNGHGHGHGHGQYLMHHGVVNPSYKPFIEESPINMMPYMPNIQQGVLNEGHPPSGLQVQNSETLSPSPSQLFDGYSQNDFSEASAVVTAPEGHSLPPRTNQLQDYDESSSTSGAPYADSRSNAVDLSCLHPPPLPKRVYYSERAPRKQVESLNRSSKSDDAQNSQFHVSDLLSRVNSQDSAIDSGNNLHDGNLSNLAEELNITSKPLHTDGKGTEDILNKDNAVTLETENHKKSPLEGKSDISARYHDPAANLPDVDWGETSVKESNDDFNNQALPVPLNANATAKVDSQAQGDILIDINDRFPRELLNDIFSKAILEEDSSSQHPLASDGIGLSINMENHEPRSWSYFQKLAQDGIDNDNASLIDQDHLGFSPAIVGDNRAQHVTPLTTDEVPLNRAEFHLNFGDEIQKDLHGENGTEITGLKTNYDPSQINDTESMQFDAMLDNLRAQESHYEVEKFEKKNNSLPPLDPSLEEFDMNTLQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKTCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQNGPGGTMATVTEYMVDGSLRHVLLRKDRQLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDLEWRTLMEQCWAPNPAARPSFTEIASRLRIMSSTASQAKSPGHKASK 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00924 1136 SMART PB1_new 174 261 IPR000270 GO:0005515
Vivi4g00924 1136 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 942 1134 - -
Vivi4g00924 1136 ProSiteProfiles Protein kinase domain profile. 854 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00924 1136 Pfam Protein tyrosine and serine/threonine kinase 855 1117 IPR001245 GO:0004672|GO:0006468
Vivi4g00924 1136 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 847 941 - -
Vivi4g00924 1136 Gene3D Phosphorylase Kinase; domain 1 847 941 - -
Vivi4g00924 1136 SUPERFAMILY CAD & PB1 domains 175 263 - -
Vivi4g00924 1136 ProSitePatterns Protein kinases ATP-binding region signature. 860 885 IPR017441 GO:0005524
Vivi4g00924 1136 PANTHER SERINE-THREONINE PROTEIN KINASE 204 1118 - -
Vivi4g00924 1136 Gene3D Transferase(Phosphotransferase) domain 1 942 1135 - -
Vivi4g00924 1136 Gene3D - 178 261 - -
Vivi4g00924 1136 CDD STKc_MAP3K-like 860 1117 - -
Vivi4g00924 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 979 991 IPR008271 GO:0004672|GO:0006468
Vivi4g00924 1136 MobiDBLite consensus disorder prediction 459 483 - -
Vivi4g00924 1136 PRINTS Tyrosine kinase catalytic domain signature 973 991 IPR001245 GO:0004672|GO:0006468
Vivi4g00924 1136 PRINTS Tyrosine kinase catalytic domain signature 1044 1066 IPR001245 GO:0004672|GO:0006468
Vivi4g00924 1136 PRINTS Tyrosine kinase catalytic domain signature 1088 1110 IPR001245 GO:0004672|GO:0006468
Vivi4g00924 1136 PRINTS Tyrosine kinase catalytic domain signature 936 949 IPR001245 GO:0004672|GO:0006468
Vivi4g00924 1136 SUPERFAMILY Protein kinase-like (PK-like) 840 1117 IPR011009 -
Vivi4g00924 1136 MobiDBLite consensus disorder prediction 593 638 - -
Vivi4g00924 1136 SMART serkin_6 854 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00924 1136 MobiDBLite consensus disorder prediction 409 529 - -
Vivi4g00924 1136 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 179 261 - -
Vivi4g00924 1136 MobiDBLite consensus disorder prediction 505 519 - -
Vivi4g00924 1136 CDD PB1_UP2 163 259 - -
Vivi4g00924 1136 MobiDBLite consensus disorder prediction 412 449 - -
Vivi4g00924 1136 Pfam PB1 domain 176 259 IPR000270 GO:0005515
Vivi4g00924 1136 MobiDBLite consensus disorder prediction 593 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00924 Vivi-Chr4 25317012 25323374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00924 32 1136 MAP Kinase Kinase Kinase AT1G16270 47.987 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vivi4g00924 PK_Tyr_Ser-Thr 4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00924 - - gmx:100801946 1600.88