Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00918 ATGGGATTTCTCACTTCACACTACAACAACAACTATAGTAACTCTTACCCTTCTCATCAAACTCTTCAAACCTTCGACAACTCCGAAACCATCACTTTCCAACATCATCATGAACAACAACAACAACACCAACAAAACTATGACTTTTCGTCTTCCTTTCTAGATGAAACCTTGTTTTTTCCGAGTCCTTCTAATTTTTACTCAAACGAGAATAATAATTATTATTATCCTTGTGAAGATCAACTAATCATTGACTCAACTTTCTCTTGTGATCAAAACGATGGTTTCGTTTCAATGAATGACATTTTCCCAAACGAGGAAAATCTCAATAACTACGTTAACAATCTTCCATGTCCGAAACGACAGAAGCTAGGTTATGAAGAAACGTTAACAAACCACCAACAACAACAACAGGAGCTTTTGAACTCAGCCAATTATTTTGTGGATGAGTTTATAGCGAACCCTTTTAGTACTACTACTTTATTCGAACCGGAAGCGGAACCGGAAGCGTTTTTGTGTTCGAATGTGGTTGATGTTGTGCAATGTGAGAAGAAGGTGGTTAGCGGCGAAAGGACTATTTCGACGCAGAGTATAGCGGCGAGGGAGAGGAGGAGGAAGATAACTGAGAAGACGCAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCTAAGATGAATACTGCTGAGATGCTTAGTGCTGCTGCTAATTATGTTAGGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGAAACTTTTAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAGCTAGTTGTTTCTCCTTTTGTTCAAGAGAAGTTGTATTCGGAAGAAAAGTGCTTTATTTCAAAAGGGATTATCACTACATTGGCCAACAATGTTGATGTTAGGTCAAAACCTTCAATCCTTCAAGGTCTTAAGCAACTTGTTGGGAAGGAGATTGATCATGAGGATGAGAAGATACCAAAACAAGAATAA 993 0.3897 MGFLTSHYNNNYSNSYPSHQTLQTFDNSETITFQHHHEQQQQHQQNYDFSSSFLDETLFFPSPSNFYSNENNNYYYPCEDQLIIDSTFSCDQNDGFVSMNDIFPNEENLNNYVNNLPCPKRQKLGYEETLTNHQQQQQELLNSANYFVDEFIANPFSTTTLFEPEAEPEAFLCSNVVDVVQCEKKVVSGERTISTQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLSAAANYVRFLQAQVGMLQVMETFSKEEKEPPPSEDLHKLVVSPFVQEKLYSEEKCFISKGIITTLANNVDVRSKPSILQGLKQLVGKEIDHEDEKIPKQE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00918 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Vivi4g00918 330 Pfam Helix-loop-helix DNA-binding domain 197 241 IPR011598 GO:0046983
Vivi4g00918 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 251 IPR036638 GO:0046983
Vivi4g00918 330 CDD bHLH_AtbHLH_like 196 248 IPR045239 -
Vivi4g00918 330 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 287 IPR045843 GO:0003700|GO:0006355
Vivi4g00918 330 Gene3D - 191 259 IPR036638 GO:0046983
Vivi4g00918 330 SMART finulus 197 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00918 Vivi-Chr4 25149457 25150748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00918 58 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 30.545 1.27e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g00918 HLH 6.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00918 - - psat:127131095 411.379