LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g00916	ATGGCTTCGTCCCTTTTGACAAAGATTCTTTTATCTCCTCGCTCGATTCACACCTCCTCCTTATTCACTCACCACCCACCAATTCTCTCTTCTCTCTTCAATGTGTTCTCTATACGAGCTGTTTCAACCTTTACATCCCAAAATACTAAGTTGACTAGTTGGGCTCCTTGTATGGCTTCTTCAGTAGTTAGTAGAAGAGCTACATATTCGACGCGATCTGCACCTACGAATGAGCCGGTTGTTTCTGTAGATTGGCTTTACGAAAACTTGAAGGAGCCGGATATTAAGGTAGTGGATGCGTCCTGGTACATGCCGGATGAGCAAAGGAATCCGATTCAAGAGTATCAGGTTGCTCACATTCCCGGGGCCCTTTTCTTTGACATAGATGGAATCGCAGACCGCACTACAAATTTGCCGCACATGTTGCCTTCAGAGGAAGCTTTTGCCGCTGCTGTTTCTGCTCTTGGCATACATAACAAAGACGACCTAATTGTTTATGACGGAAAAGGACTATTTAGTGCAGCCCGTGTTTGGTGGATGTTCCGAGTGTTTGGACATGACAGAGTTTGGGTATTAGACGGTGGCCTACCAAGATGGCGTGCATCTGGTTACGATGTTGAATCTAGTGCTTCGAGTGATGCTATTCTTAAAGCCAGTGCTGCAAGTGAGGCAATAGAGAAAGTATCTCAAGGACAAGCAGTTGGTCCAATCACATTTGAGACTAAATTTCAGCCACATCTTGTTTGGACCCTTGAACAGGTAACGAAAAATATAGAGGAAAAATCTCACCAACAGGTAGATGCTCGATCAAAGCCTAGGTTTGACGGAATTGCACCAGAGCCCAGAAAGGGAATCAGAAGTGGCCACGTACCTGGCAGCAAATGCATTCCTTTTCCCCAGATTTTAGATAGTTCACAAGCATTGTTACCAGCAGGCGAGCTTAAGAAGCGATTTGAACAAGAAGGCATCTCTTTGGAAAAGCCGGTCGTGACTTCGTGTGGAACAGGAGTAACTGCATGCATTCTTGCATTGGGTCTTCATCGTCTTGGAAAGACCGATGTTCCGGTTTACGACGGATCATGGACCGAATGGGGATCACATCCTGATACTCCTGTTGACACCGCAGATATCGCCGCAAAAACGCAATAG	1149	0.4578	MASSLLTKILLSPRSIHTSSLFTHHPPILSSLFNVFSIRAVSTFTSQNTKLTSWAPCMASSVVSRRATYSTRSAPTNEPVVSVDWLYENLKEPDIKVVDASWYMPDEQRNPIQEYQVAHIPGALFFDIDGIADRTTNLPHMLPSEEAFAAAVSALGIHNKDDLIVYDGKGLFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVSQGQAVGPITFETKFQPHLVWTLEQVTKNIEEKSHQQVDARSKPRFDGIAPEPRKGIRSGHVPGSKCIPFPQILDSSQALLPAGELKKRFEQEGISLEKPVVTSCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGSHPDTPVDTADIAAKTQ	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g00916	382	SMART	rhod_4	81	205	IPR001763	-
	Vivi4g00916	382	SMART	rhod_4	249	370	IPR001763	-
	Vivi4g00916	382	SUPERFAMILY	Rhodanese/Cell cycle control phosphatase	77	210	IPR036873	-
	Vivi4g00916	382	ProSitePatterns	Rhodanese signature 1.	115	126	IPR001307	GO:0004792
	Vivi4g00916	382	ProSiteProfiles	Rhodanese domain profile.	91	208	IPR001763	-
	Vivi4g00916	382	ProSiteProfiles	Rhodanese domain profile.	259	373	IPR001763	-
	Vivi4g00916	382	Gene3D	-	244	370	IPR036873	-
	Vivi4g00916	382	CDD	TST_Repeat_2	250	366	-	-
	Vivi4g00916	382	PANTHER	THIOSULFATE SULFERTANSFERASE	74	375	IPR045078	GO:0016783
	Vivi4g00916	382	ProSitePatterns	Rhodanese C-terminal signature.	354	364	IPR001307	GO:0004792
	Vivi4g00916	382	MobiDBLite	consensus disorder prediction	260	291	-	-
	Vivi4g00916	382	Pfam	Rhodanese-like domain	82	201	IPR001763	-
	Vivi4g00916	382	Pfam	Rhodanese-like domain	251	366	IPR001763	-
	Vivi4g00916	382	CDD	TST_Repeat_1	80	203	-	-
	Vivi4g00916	382	FunFam	Sulfurtransferase	73	215	-	-
	Vivi4g00916	382	Gene3D	-	73	215	IPR036873	-
	Vivi4g00916	382	FunFam	Sulfurtransferase	244	375	-	-
	Vivi4g00916	382	SUPERFAMILY	Rhodanese/Cell cycle control phosphatase	252	374	IPR036873	-
	Vivi4g00916	382	MobiDBLite	consensus disorder prediction	260	282	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g00916	Vivi-Chr4	25142868	25147578	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g00916	58	376	Sulfurtransferasese or Rhodanese	AT1G79230	77.116	0.0	541

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g00916	K01011		-	gmx:100798053	640.573