Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00908 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGAGTCAAGTTAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTTAAACTCATTGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGATCTCTCCCTAAACAAGCAGGTCTTCAAAGATGTGGCAAAAGTTGTCGTTTAAGATGGATCAATTATCTTAGGCCTGATTTAAAGAGAGGCAATTTTACAGTAGATGAAGAAGAAACCATAATAAAGCTACATAAAGCCTTGGGAAACAAGTGGTCAAAGATCGCATCGTATATGCCTGGTAGAACTGATAACGAGATCAAGAATGTGTGGAACACACATTTGAAGAAAAAACTCGTCGTCAAAAATTCAGATTCAACGAGTGGAGACGAATCCAAATTAGAGTCATCAATAACCTCACCCTCTTCCTCGGAATCAATTTCAAACGAGGCACCAATACAAGATTCCGAAAAACAAGTTTCCACCAACGAACATGTTATCGTTGATGAGGATCCAAAAGGGTCATCAAATTCATTGTCTTATTCAATCGAGTCTAACAAAATCTTGAACTCGGGCGAAATTGTTGACAACAATATAGACCAACAACATTTGAGTTCTCTAGAGTCTTATGATATTGACAAAATATTAGAAGATTTTGAAAATATGAACAACTTGATTGAAATTCCATGGGAATCAGACTATGATCTTTGGAATTTTATTGACAATGTTGGTTCCTATGATCAATCAAATGTTGGTGAAGAGAGTGTTATTCAAGATGTTGTTGAGAATGAGTTTGGAGAAGTAGGTGAAATAAAGGAGTCAAAGAGCAAAGAAGAGGTTCTACCAAAGAATTATGAAGTTGACCCTCATGAGGCATTTGATTTCAATGATATTATAATGTCTGATTCTGAATTAGATTTTAGTAATATTCAATTGTGGTCCTCTTTTTCTGAAAATAACAATAGTCCTAAAGTTTAA 975 0.3559 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVDEEETIIKLHKALGNKWSKIASYMPGRTDNEIKNVWNTHLKKKLVVKNSDSTSGDESKLESSITSPSSSESISNEAPIQDSEKQVSTNEHVIVDEDPKGSSNSLSYSIESNKILNSGEIVDNNIDQQHLSSLESYDIDKILEDFENMNNLIEIPWESDYDLWNFIDNVGSYDQSNVGEESVIQDVVENEFGEVGEIKESKSKEEVLPKNYEVDPHEAFDFNDIIMSDSELDFSNIQLWSSFSENNNSPKV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00908 324 Gene3D - 71 142 - -
Vivi4g00908 324 FunFam Transcription factor RAX3 9 69 - -
Vivi4g00908 324 SMART sant 15 65 IPR001005 -
Vivi4g00908 324 SMART sant 68 116 IPR001005 -
Vivi4g00908 324 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vivi4g00908 324 MobiDBLite consensus disorder prediction 121 161 - -
Vivi4g00908 324 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vivi4g00908 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vivi4g00908 324 Gene3D - 16 68 - -
Vivi4g00908 324 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vivi4g00908 324 CDD SANT 71 114 IPR001005 -
Vivi4g00908 324 MobiDBLite consensus disorder prediction 124 160 - -
Vivi4g00908 324 CDD SANT 18 63 IPR001005 -
Vivi4g00908 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vivi4g00908 324 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vivi4g00908 324 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vivi4g00908 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00908 Vivi-Chr4 24992402 24995100 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00908 1 254 MYB Transcription Factor Family AT1G79180 48.443 1.38e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g00908 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00908 K09422 - gmx:100101836 369.007