Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00892 ATGAAGCAGTTGATTCGTCGACTATCCCGAGTCGCTGACTCCTCAACCTACACTCTTCTCCGAACAGACTCATCAACAGCTCGTCGCCGGCGACCTTCCCGCCGAGTCGAATCGTTCCGGATCCGGAGATCTTCAACCGTTGTTCCGGAAGGACATGTCCCGATCTATGTAGGAGACGAGATGGAGAGATTCGTCGTGTGTGCGGAGCTTCTGAACCATCCGATTTTCATCAAACTTCTGAACGAATCCGCACAGGAATACGGTTACGAACAGAAAGGAGTTCTTCGATTACCGTGTCATGTTTTTGTGTTCGAGCGCGTGCTCGACGCGCTCCAACACGGACACGACACACGCTATATCACAGAGCTTCTCAATTCAGAAGTAGAAGAAGAAGAAAGATTCTGCTGTTGA 411 0.5036 MKQLIRRLSRVADSSTYTLLRTDSSTARRRRPSRRVESFRIRRSSTVVPEGHVPIYVGDEMERFVVCAELLNHPIFIKLLNESAQEYGYEQKGVLRLPCHVFVFERVLDALQHGHDTRYITELLNSEVEEEERFCC 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00892 136 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 35 107 IPR003676 GO:0009733
Vivi4g00892 136 Pfam Auxin responsive protein 7 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00892 Vivi-Chr4 23978859 23979924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00892 45 121 Calmodulin-binding Proteins AT4G31320 38.961 4.17e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00892 K14488 - gmx:100793103 171.785