Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00885 ATGGCGTCGAACAAGATCGAACGGGGTCACCAGATGTACCGTGACGGAGTCTACAAAGAGGCGTTAGGGTTCTACACGGAAGCCATCGCTATGGCGAAGACGAATCCGCAGAAGATCGCTTTGCATAGTAATCGTGCTGCTTGTTTCCTTAAGCTTCATGATTTCAAGAAGGCAGCAGAAGAATGTACCTCGGTACTTGAGCTTGATAGCAATCACAGTGGAGCATTGATGTTGCGGGCTCAAACACTGGTGACCCTGAAGGAGTACCATTCTGCACTTTTTGATGTCAACAGACTCTTGGAGTTAAATCCATCCTCCGAGGTATATCAAAACCTTCACGCACGCTTGAAGACACAGTTGTCACTTGCTCCAATACCTGAGTCAGAAGAGGAGTTTGAGGAACAGGAAGATGAGAAGGATGAGGTGATGCTAAAAGGTGAGCAAACGAAGGAAGAAATCGGACAGAAACATGCCACAGCTTCTAATGTTAGGATAGATCAGAAGGTTGAGCCTGGCAAAGGTGTAATTAGTATTGAATGTACCCCTAAAGAAACAGACCCCAAGTTTTCATCCAAACAGGAAAGAGACCAAATAAACGAGCCTAAAAAGTCAATGGAAGAGCTTAAAATTCCTAGACCACTAAACAACGAATCAGCAGAGCAAGGATGGCAAACAATTCCAAAACCTAAAGGACACTCAGCTCTGGACTATGCACGGTGGGACAGTGTTGACAATGATTCTAGCGAAGATGATGAAGATGAAGAAGATGAATCTTTTCCTCAGTACCGTTTTCGTGTGAAAACAATTGGTGTACGTCCTGTGAAATGA 828 0.4444 MASNKIERGHQMYRDGVYKEALGFYTEAIAMAKTNPQKIALHSNRAACFLKLHDFKKAAEECTSVLELDSNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLAPIPESEEEFEEQEDEKDEVMLKGEQTKEEIGQKHATASNVRIDQKVEPGKGVISIECTPKETDPKFSSKQERDQINEPKKSMEELKIPRPLNNESAEQGWQTIPKPKGHSALDYARWDSVDNDSSEDDEDEEDESFPQYRFRVKTIGVRPVK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00885 275 SMART tpr_5 2 35 IPR019734 GO:0005515
Vivi4g00885 275 SMART tpr_5 73 106 IPR019734 GO:0005515
Vivi4g00885 275 SMART tpr_5 39 72 IPR019734 GO:0005515
Vivi4g00885 275 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 275 - -
Vivi4g00885 275 MobiDBLite consensus disorder prediction 185 210 - -
Vivi4g00885 275 Gene3D Tetratricopeptide repeat domain 1 152 IPR011990 GO:0005515
Vivi4g00885 275 Pfam Tetratricopeptide repeat 51 116 - -
Vivi4g00885 275 MobiDBLite consensus disorder prediction 174 261 - -
Vivi4g00885 275 SUPERFAMILY TPR-like 6 119 IPR011990 GO:0005515
Vivi4g00885 275 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00885 Vivi-Chr4 23267153 23271245 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00885 2 120 Calmodulin-binding Proteins AT3G25230 34.351 4.25e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00885 - - gmx:100792046 397.127