Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00877 ATGTCCATAAGTTTGCATGTGGTTCAGCCAGGTCCAACAACACTGTTTTCAATCTTGTTAGCAATCCTCCTTCTACCGGTATCGGCTAATGATTTAGATCAAAAGTATTTCATGCTAGTGAACCAATGCAAATTCATAGTATGGCCAGCTTCCTTTTCTACCGCTCGAAACACAACTCTTGAAACCAACTTTAGTTTAAAAATGTGGGACAGGTTCACAGTTTGGGCTCCTCCAAACTGGAACGGCCATGTTTGGGGCCGAACTCTCTGCAGAAATAATTCAGCCACAGGGGGAAACTTCTCATGCATTACTGGTGATTGCGGTACTGGGAAGCAATCATGTGATGGAATGCGAGACATGCCTCCTGCCACACTAGCAGAATTCCGTCTAGGAAACAATGGTCTTGTTTTTTATAATGTTGATGTTGTAGAAGGTTTCAATATCCCCATAGTGGTGGTTCCTATTGGTGTTTCTGGTGAGAACGTGAATTGTAGCACTGCAGGTTGCCTTACAAACATTAATAATATGTGTGCAAAAGACAATGGGACAAACACTTTTACTTGTTCAACTAATTTCTACAAGATCATATTTTGCCCAGCTTCAAGCATGGGACTTTTCGATCAAAGTGTGAGTGTAGACGACTCATTCACTGCTAGCAATGGGACAAATCGGTTGCTCTCTTCTTCGAGAGAGTTTGCTTTTGGTACTTTGATCATTGTCATGTCAATTATATTGGGATTCTTTATCGCTATAGTTATAACATTGGTTGGCGCAATTTTTTATTGCTACAACTCAAAGAAGATAAAAAGTAGCACAACCAACAAAAAAGTTATTGATAGAAATTTGAGAATTTTTTCTTTCAAAGAAATTACAAAAGTAACAAACAATTTTAGGGAAGAATTGGGAAGAGGGTCTTGTAGCATTGTATACAAAGGAATTGTAGATGTGGATACTTGTGTCGCGGTTAAAAAATTGGACAAGTTATTTCAAGATAGCGATAAGGAATTTCAAACTGAAATGAATGTGATAATCAAAACTCATCATAGGAACCTTGTACGTCTTCATGGGTATTGTAGTGAAGATCAACACAGGATTTTGGTGTATGAGTTAATGAGTAATGGTACTTTAGCAAGATTTCTTTTCACACCTTTGAAACCAGACTGGAACCAACGAGTTCATATTATCATTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAAGAATGTTGCACCCAAATAATTCACTGTGACATAAAGCCTCAAAACATCCTTCTTGATGATGACTATAATGCCAAGATTTCAGATTTTGGGTTAGCAAAACTATTATTGATTAATCAAAGTCACACAAAAACCGGAATCAGAGGAACCAAAGGTTATGTTGCACCAGATTGGTTTAGGAGTGCACCTATCACTTCTAAGGTTGATACTTTTAGTTTTGGAGTGTTGTTATTAGAGATTATTTGTTCTAGGAAAAATATAGAGGATGATACTGTTAGTGAAGAAAAAAGGATTTTAATTGACTGGGCATATGATTGCTACAAGACTGGTAGAATTGATATTCTTTTAGAAAATGAATATGAGGCAGACAAAGATATGAGTAGATTTGAAAAATTTGTCATGATTTCTATTTGGTGCACTCAAGAAGATCCATCTCTAAGGCCACCAATGAAGAAGGTGTTGTTAATGCTAGAAGGGATTGTTGAAGTTGAAATTCCTCCAAATCCCTACTTGTATGGTTCCTCTAATCAAAGTTAA 1755 0.3698 MSISLHVVQPGPTTLFSILLAILLLPVSANDLDQKYFMLVNQCKFIVWPASFSTARNTTLETNFSLKMWDRFTVWAPPNWNGHVWGRTLCRNNSATGGNFSCITGDCGTGKQSCDGMRDMPPATLAEFRLGNNGLVFYNVDVVEGFNIPIVVVPIGVSGENVNCSTAGCLTNINNMCAKDNGTNTFTCSTNFYKIIFCPASSMGLFDQSVSVDDSFTASNGTNRLLSSSREFAFGTLIIVMSIILGFFIAIVITLVGAIFYCYNSKKIKSSTTNKKVIDRNLRIFSFKEITKVTNNFREELGRGSCSIVYKGIVDVDTCVAVKKLDKLFQDSDKEFQTEMNVIIKTHHRNLVRLHGYCSEDQHRILVYELMSNGTLARFLFTPLKPDWNQRVHIIIGIARGLVYLHEECCTQIIHCDIKPQNILLDDDYNAKISDFGLAKLLLINQSHTKTGIRGTKGYVAPDWFRSAPITSKVDTFSFGVLLLEIICSRKNIEDDTVSEEKRILIDWAYDCYKTGRIDILLENEYEADKDMSRFEKFVMISIWCTQEDPSLRPPMKKVLLMLEGIVEVEIPPNPYLYGSSNQS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00877 584 FunFam S-receptor-like serine/threonine-protein kinase 264 370 - -
Vivi4g00877 584 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 163 574 - -
Vivi4g00877 584 ProSiteProfiles Thaumatin family profile. 37 199 IPR001938 -
Vivi4g00877 584 CDD STKc_IRAK 301 566 - -
Vivi4g00877 584 SUPERFAMILY Osmotin, thaumatin-like protein 36 199 IPR037176 -
Vivi4g00877 584 SMART tha2 37 199 IPR001938 -
Vivi4g00877 584 PRINTS Pathogenesis-related protein signature 136 152 IPR001938 -
Vivi4g00877 584 PRINTS Pathogenesis-related protein signature 189 198 IPR001938 -
Vivi4g00877 584 PRINTS Pathogenesis-related protein signature 83 94 IPR001938 -
Vivi4g00877 584 PRINTS Pathogenesis-related protein signature 36 48 IPR001938 -
Vivi4g00877 584 Gene3D Phosphorylase Kinase; domain 1 259 370 - -
Vivi4g00877 584 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 371 571 - -
Vivi4g00877 584 ProSitePatterns Thaumatin family signature. 98 114 IPR017949 -
Vivi4g00877 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vivi4g00877 584 Gene3D Thaumatin 36 199 IPR037176 -
Vivi4g00877 584 ProSiteProfiles Protein kinase domain profile. 295 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00877 584 SUPERFAMILY Protein kinase-like (PK-like) 281 575 IPR011009 -
Vivi4g00877 584 Pfam Thaumatin family 41 180 IPR001938 -
Vivi4g00877 584 Gene3D Transferase(Phosphotransferase) domain 1 371 571 - -
Vivi4g00877 584 SMART serkin_6 295 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00877 584 Pfam Protein kinase domain 298 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00877 Vivi-Chr4 23005647 23008868 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00877 16 578 Receptor kinase-like Gene Family AT5G38280 33.020 6.76e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi4g00877 Pkinase 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00877 - - vvo:131595175 1114.37