Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00875 ATGAAGGATGATGGAAATTTTCAGTTACGAGACCAAAACTTTGTTGTATTATGGGAAAGTTACAATCATTTTACTGACACATTAGTTCCTGGTCAAGCTTTAAATTTGAACAACTCTCTTCATTCTCGACAAGGAGAATTCAATTTTTCACGAGGAAGGTTTGAACTTTGCCTACAAGAAAGTGGGGATGTTGTGCTCAATCGTGTAAGTTTTCCTTCAAATACAAACATTAATGCTCAATTTGAGGCTTACTATGATAGTCGCACAGTTGACCCGTATAATAAATCTGCAAATGTTGGTCAGAAACTTATATTTGACAAATATGAATTATACATATCGAAAAAAAATAGCTCAAAGTTTTCTATCATCGGCAACCGAAATGAGACATTTTTAAATGATGACTTCTACTACAAAGCAACAATCAATTATGATGGAGTATTTACCTTGTCATATTTTCCTAAATATCTAAAAAATGTTACGAGTTGGTTAGTTGCGAAGACAATACCTGAGAACATGTGTTCGAATGATAATTTTAACAATGGTAAAGGTGTTTGTGGAATAAATAGTATTTGCAACCTTCGATATGATCAAAGGACAATGTGTACATGTCTAAAAGGTTATTCTCTAATTGATTCAAACAACAGATATGGTGGTTGCAAACAAAATGTCCAAATCATTTGTCCAAGTAGGCATAATGTTTCACATAAGGATGCATATTTGATGATGAGATTGTCCAACATTTATTGGCCTAAATCTGAATATAAAACATGCAATTCTTGTACTCTTGAAGACTGCAAGGATTATTGTTTGCAAGATTGCTTATGTGTGTTGGCTTTTTTCAATGGAAGTTCTTGTTGGAAGAATAATTTGCCACTCTTACATGGGAGAAAAGAGTTGACAGTAAGAGGAACTTATTTCATAAAAATAGATAAAACTGAGACTCCATCATCCTTCTCCAGTGAGATGGACGATCAAGATAATGGCAAAACAAAAATGAAGAAAGTTCATGAAACTTTGATTATTGTGATATCAATTATTTTTGTGATTTCAACATTGGTTGGTGCAATAGTTTTTTGGAAAAAACATAAGAAGACCGAAAGTGGTGTATCCATCAAGAGTATTGTTGACAAAAACTTAAGAATTTTCACCTTTAAGGAAATTACAGAAATAACAAACAACTTTAGAGAAGAATTAGGAAGAGGGTCTTGTAGCATTGTATATAAAGGAACAATAGAGGCAGATGTTTGTGTGGCTGTTAAGAAACTAGACAAGTTATTCCAAGATAGTGATAAAGAATTTCAAACTGAAATGAATGTGATAATTGAAACTCATCATAGGAATCTTGTTCGCCTTCATGGGTATTGTAGTGAGGAACAACACAGAATTTTGGTGTATGAGTTAATGAGTAATGGTACTCTAGCAAGCTTCATTTTCACCCCTTTGAAACCAAGTTGGAACCAACGGGTTTGGATTATCATTGGAATTGCAAGGGGTCTTGTTTACTTGCATGAGGAATGTTGCACCCAAATCATCCATTGTGACATAAAGCCACAAAACATACTTCTAGATGATGATTACAATGCTAAGATTTCTGACTTTGGGTTTGCAAAACTGTTATTGATAAATCAAAGTCACACAAAAACTGGAATTAGAGGAACCAAAGGTTATGTTGCACCCGATTGGTTTAGGAGTGCTCCGATCACTGCTAAGGTTGATGCTTATAGTTTTGGTGTGTTGCTACTAGAGATTATTTGTTGTAGGAAAAATGTTGAGGATGATAACGTTAGTGAAGAAAAAAGGATTTTAATTGATTGGGCATATGATTGCTACAAGGCTGGAAGAATGGACATTCTTCTCGAAAACGATTACGAGGTAGTAAATGATATCAGCAAATTGGAAAAGTTTGTCATAATTTCTATTTGGTGCACTCAAGAAGATCCATCTCTAAGGCCACCAATGAAAAATGTTTTGTTAATGCTGGAAGGGATTGTTAATGTTGAAATTCCTCCAAGTCCTTACCTTTATAGTTCTTCTAGTTAA 2040 0.3397 MKDDGNFQLRDQNFVVLWESYNHFTDTLVPGQALNLNNSLHSRQGEFNFSRGRFELCLQESGDVVLNRVSFPSNTNINAQFEAYYDSRTVDPYNKSANVGQKLIFDKYELYISKKNSSKFSIIGNRNETFLNDDFYYKATINYDGVFTLSYFPKYLKNVTSWLVAKTIPENMCSNDNFNNGKGVCGINSICNLRYDQRTMCTCLKGYSLIDSNNRYGGCKQNVQIICPSRHNVSHKDAYLMMRLSNIYWPKSEYKTCNSCTLEDCKDYCLQDCLCVLAFFNGSSCWKNNLPLLHGRKELTVRGTYFIKIDKTETPSSFSSEMDDQDNGKTKMKKVHETLIIVISIIFVISTLVGAIVFWKKHKKTESGVSIKSIVDKNLRIFTFKEITEITNNFREELGRGSCSIVYKGTIEADVCVAVKKLDKLFQDSDKEFQTEMNVIIETHHRNLVRLHGYCSEEQHRILVYELMSNGTLASFIFTPLKPSWNQRVWIIIGIARGLVYLHEECCTQIIHCDIKPQNILLDDDYNAKISDFGFAKLLLINQSHTKTGIRGTKGYVAPDWFRSAPITAKVDAYSFGVLLLEIICCRKNVEDDNVSEEKRILIDWAYDCYKAGRMDILLENDYEVVNDISKLEKFVIISIWCTQEDPSLRPPMKNVLLMLEGIVNVEIPPSPYLYSSSS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00875 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vivi4g00875 679 ProSiteProfiles Protein kinase domain profile. 392 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00875 679 FunFam S-receptor-like serine/threonine-protein kinase 360 467 - -
Vivi4g00875 679 Gene3D - 24 179 - -
Vivi4g00875 679 Pfam Protein kinase domain 395 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00875 679 Gene3D Transferase(Phosphotransferase) domain 1 468 668 - -
Vivi4g00875 679 Gene3D Phosphorylase Kinase; domain 1 355 467 - -
Vivi4g00875 679 SUPERFAMILY Protein kinase-like (PK-like) 378 674 IPR011009 -
Vivi4g00875 679 SMART serkin_6 392 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00875 679 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 41 IPR036426 -
Vivi4g00875 679 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 668 - -
Vivi4g00875 679 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00875 Vivi-Chr4 22938926 22941331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00875 378 662 Receptor kinase-like Gene Family AT1G60800 42.466 3.19e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi4g00875 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00875 - - tpra:123893942 939.102