Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00874 ATGGTTATTCAAACTTCACTTCTGTTCTTCTTCACACTTCATCTATCAGTAACAGTTGTAACTTCAGCAAAATTAACTATAATTAACCAATGCAATTACACGGTGTGGCCAGCCTTATACTCTACCGATGAAGCCAGTGAATCACCCACCGGATTCATTTTAAAACCCGGCGAGAATTCCATAATCACAACCTCCGATAAATGGACCGGCCGCTTATGGGGCCGGACTCTCTGCACAACAGATTCCACCACCGGAAACTTCTCCTGTGTCACTGGCGATTGCGGCTCAGGAAAGTGGGAATGTGACAGAAGCGGATCACCGCCTTTGACGCTGGCGGAGTTCACTTTGAACGGTCCCACCAGTCAAGACTTTTACGATGTCAGTTTAATTAACGGTTATAACGTTCCATTGAATATTGTCCCATTGGATAGTTCTGGAGTGTGTAACAGTACGGGTTGTCCAACCGATCTGAACGCGGTGTGTCCGACGGAGTTGAAGCTAATGAAAAATGGGAAATTCGTGGCGTGTCGGGGTCCCTGTGCTGTTGGGAATCATTCAACTGCAGAGACATGTGGGCCGAGTTTTTATTCTAAGATTTTCAAGAAGGCGTGCCCTGAAGCCTTTAGCTATCCGGAGGATTCGGCCAGCACGTTCACATGTTCCGCGACCGATTACCAGGTCGTCTTTTGTCCCTCCAATAACACCAGCTTAAATTCATTAGATCAAGGTGGCAGTGTAAGTGTTGGCGAGTCACTTACTGCTGGTGGTGGAACAACTCGATGGCTCTCTCCTTCTGGAGATTTTGCATTTGGATTTTACCAAATTCCTGGTGAGCTTTTCTTACTAGCTATATGGTATGACAAGGTACAAACTGATGCAGTCATTTGGTATGCGAATGGAGATAGCCCTGCACAGAAGGGTTCAAGATTGGTATTAAATGGCTCTAGTGGCTTAGTGCTTACGAACCCTCAAGGTTTAGAGATATGGAGATCGGATTTCAGATCAGGTACAATTTTTAAAGGTATAATGAATGATGATGGAAACTTTCAATTGCAAGACAAAAACTCCGGCACAATTTGGGACAGTTTTAGTGATCCTACAGACACAATTGTGCCTAATCAGGTAATGGAGTTAAATGGAAATCTTTCTTCACGACAAGGAGCGTTTAACTTCTCACGTGGAAGGTTTAAACTTCATCTACAAGAGGATGGGAATCTTGTGCTTAATCTTATAAATTTGCCGAGCAACTACAGTTACTATCCTTACTACAGTTTTGGCACTAGTGATGCTAAGAATCAAACAAATGTTGGCCAACGATTGATGTTTGACAGATCAGGTTTCTTATACATTGAGAAAAAAAGTGGAGATAATTTTTCTATAAGCAACCAGAACGGGACATTCTCAACCGATAATTTCTACTACAAGGCAACAATTAATTATGATGGAGTTTTCACCATAGCATTTTACCCTAAAGATCCAAAAAGAGGACAGAGTTGGGTCATTGCGAAAACGATACCAGAAAACATATGCTTGTATTCTACATTCACAGACGGTGAAGGTGTATGTGGGTTTAATAGCATTTGCACCCTTACAAATGACCAAAGGCCGAATTGTACCTGCCCAGACGGATATTCTCTAATTGATTCAAATAACGTTTACGCTGGCTGCATACCGAATTTCCAAGTCATTTGTCAAGCAGGTAGGAACAAGGGTTGGCAAGATGATATGTATACAATGAAGGAATTGCCAAATACCGATTGGCCTAAATCTGATTATGAAATAATCAGTCCATCTACTTTGCCAGAATGTAAGGAATCATGTTTGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAACCAAAGTTCTTGCTGGAAGAAGAAACTCCCACTATCCTATGGAAGAAATGATCAGGTAGTAAAAGGAATTTCTGTCATGAAATTGATGAAAAATGATCCTTTTACATCCTTGCCAAATCAAAAGAAACATCATGAAACATTGATTATTGTGATTTCAGTTCTTTTAGGAAGCTCTGTGCTTGTCATTTTGACATTACTCGGGGCAATGTTTTTTGGGTTTCCTTACAACCGCAAGAAGATCAAGAGTTTTAGAACCAACAAAAATGTTGTTGACACTAACCTGCGTAATTTTAGTTTCAAGGAAATCGTTGAAGCAACAAGTAACTTCAAAGAAGAACTTGGAAGAGGGTCTTGTAGCATTGTGTACAAAGGAACAATAGAGATGATGGTCAATGTAGCAGTTAAGAAACTGGATAAATTGCTTCAAGATAGGGATAAGGAATTTCAGACTGAAATGAGTGTGATAGGACAAACTCATCACCGCAACCTTGTCCGACTTCTTGGATATTGCAATGAAGGACAACATCGGATTTTGGTATACGAGTTAATGAGCAATGGAACTTTAGCAAGTTTCATTTTCACAACTTTAAAACCAAATTGGAACCAACGGTTCCAGATTGTTCTTGGAATCGCAAGAGGTCTTGTTTACTTGCATGAGGGATGTTGCACCCAAATCATCCATTGTGATATTAAACCGCAAAATATACTTCTGGATGATCAATACAATGCTAGGATTTCAGATTTTGGATTAGCGAAGCTATTGCTGATTAATTAG 2631 0.404 MVIQTSLLFFFTLHLSVTVVTSAKLTIINQCNYTVWPALYSTDEASESPTGFILKPGENSIITTSDKWTGRLWGRTLCTTDSTTGNFSCVTGDCGSGKWECDRSGSPPLTLAEFTLNGPTSQDFYDVSLINGYNVPLNIVPLDSSGVCNSTGCPTDLNAVCPTELKLMKNGKFVACRGPCAVGNHSTAETCGPSFYSKIFKKACPEAFSYPEDSASTFTCSATDYQVVFCPSNNTSLNSLDQGGSVSVGESLTAGGGTTRWLSPSGDFAFGFYQIPGELFLLAIWYDKVQTDAVIWYANGDSPAQKGSRLVLNGSSGLVLTNPQGLEIWRSDFRSGTIFKGIMNDDGNFQLQDKNSGTIWDSFSDPTDTIVPNQVMELNGNLSSRQGAFNFSRGRFKLHLQEDGNLVLNLINLPSNYSYYPYYSFGTSDAKNQTNVGQRLMFDRSGFLYIEKKSGDNFSISNQNGTFSTDNFYYKATINYDGVFTIAFYPKDPKRGQSWVIAKTIPENICLYSTFTDGEGVCGFNSICTLTNDQRPNCTCPDGYSLIDSNNVYAGCIPNFQVICQAGRNKGWQDDMYTMKELPNTDWPKSDYEIISPSTLPECKESCLQDCLCVLVSFNQSSCWKKKLPLSYGRNDQVVKGISVMKLMKNDPFTSLPNQKKHHETLIIVISVLLGSSVLVILTLLGAMFFGFPYNRKKIKSFRTNKNVVDTNLRNFSFKEIVEATSNFKEELGRGSCSIVYKGTIEMMVNVAVKKLDKLLQDRDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFIFTTLKPNWNQRFQIVLGIARGLVYLHEGCCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLIN 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00874 876 Gene3D - 366 492 IPR036426 -
Vivi4g00874 876 SMART serkin_6 726 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00874 876 SUPERFAMILY alpha-D-mannose-specific plant lectins 293 414 IPR036426 -
Vivi4g00874 876 Gene3D Transferase(Phosphotransferase) domain 1 802 875 - -
Vivi4g00874 876 ProSiteProfiles Thaumatin family profile. 22 231 IPR001938 -
Vivi4g00874 876 SUPERFAMILY Osmotin, thaumatin-like protein 24 232 IPR037176 -
Vivi4g00874 876 SMART blect_4 243 366 IPR001480 -
Vivi4g00874 876 Gene3D Phosphorylase Kinase; domain 1 692 801 - -
Vivi4g00874 876 ProSiteProfiles Protein kinase domain profile. 726 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00874 876 SUPERFAMILY Protein kinase-like (PK-like) 710 874 IPR011009 -
Vivi4g00874 876 Gene3D Thaumatin 23 231 IPR037176 -
Vivi4g00874 876 Pfam Protein kinase domain 728 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00874 876 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 241 364 - -
Vivi4g00874 876 Pfam Thaumatin family 29 231 IPR001938 -
Vivi4g00874 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Vivi4g00874 876 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Vivi4g00874 876 SMART tha2 25 231 IPR001938 -
Vivi4g00874 876 FunFam Os07g0541700 protein 802 876 - -
Vivi4g00874 876 Gene3D - 236 365 IPR036426 -
Vivi4g00874 876 FunFam S-receptor-like serine/threonine-protein kinase 695 801 - -
Vivi4g00874 876 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Vivi4g00874 876 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vivi4g00874 876 PRINTS Pathogenesis-related protein signature 221 230 IPR001938 -
Vivi4g00874 876 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Vivi4g00874 876 FunFam THAUMATIN-LIKE PROTEIN 1 23 231 - -
Vivi4g00874 876 Pfam D-mannose binding lectin 294 381 IPR001480 -
Vivi4g00874 876 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 252 874 - -
Vivi4g00874 876 ProSiteProfiles Bulb-type lectin domain profile. 237 364 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00874 Vivi-Chr4 22907920 22912601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00874 713 872 Receptor kinase-like Gene Family AT5G38280 42.331 2.02e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi4g00874 Thaumatin 1e-60 CL0293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00874 - - vvo:131594635 1767.28