Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00834 ATGACGGCTAACCATCCCGATTATGCTTCTTTGGCTGCTAAGACTGCTGTTTCGAATCTGCATAAGCACACTAAGGATTCGTTTTCGGAAACTGTGAAGATTATGTACAATCATTTTAATCATAGATCTGGGAAGAAAGCTCCGTTGATTGCTAATGATGTCTATGAAATAATCATTGAGAATGCGACTCGATTGGACAACGAGAGATGGTTTACTCATGCTTCTCCAACTCTTTTCAATGCTGGTACACCTTGGGCCAAGGGTGGTAAGAACCAAAAGGTTATTGCACTACTTGTTCTTGCTATGAAAGGGTGGAATTTGCCAGTTAGTGCTGATGAAGAGAAGACTTCTAATATTCCAGACTGTGAGCAATACAAGTCTGATTTTCCAGAAGAATACACGGATGCTAAATTTTTTGTCATCAAGTGTTATAGTAAGGATGACATTCAAAAAAGCATCAAGTATGATGTATGGGCCAGCACACAAAATGACAACAAGAAGCTTGATGGCGCCTACCAAAAGGCTCAGCAGAAACATGGTGGCTGCCCTATTTTCCTTTTGTTCTTTGTTAATACAAGTGGGAAGTCAGTTGGGCTTGCTGAGATAATTGGACCTGTTGATTTTAACAAAATTTTGGAGTACTGGCAGCAAGACAAGTGGGATGGTGGTTCTAGCTCAACTAACAACCATTTCTCAAATTCAGTTTTAGATCATCCGGTGTTTATACCTGCATATTTAAGAAATGTTGTTCGAAATGCATCTAGACCTTCGAGTACTGCAAATTTAAGTCGTGTTGTTGATGAGGCTGATTGTTTATTTGGCATGGGTTTTGCTGAGCAGCTACATCAGATTCTTGCTCAGCTTGGTGATCACCATCAGACCTTGCTTTTCAGTGCGACATTACACAGTGCTCTTGCAGAATTTGCTAAGGCTGGTCTACGAGAGCCTCTCCTTGTCCGCCCTGATCTGGAAACTAAAATTAGTCCTGACTTAAAGCTTGTCTTTTTCACTTTGAGGCAAGAAGAGAACTCGTTGTTTCAACAAGAGGATATTGAGCCTTCTGAATGTTATGGAGACATGAATCAAGATGCTCGCAAAATGCATGTGTCAAGGTTTAAGTCATGGAATATATTGTTGTTGATTGTCACTGATATTGTTGTTCGAGGCATTGATATTCCATTGCATGATACTGTTATCAATTGGAATTTCTGGCACAAGCCTAAAATATTTATTCATCTAGTTGGAAGGGTTGCAAGAGCTGATCGTGTTCTTGCTTGTGATCTTCATTCAGGGCAGTCTATGGGTTACTTTGATATTCCATTGGATCATGTGCATTGTCAGCCTGTGATTCTTGATTATCTTGCTAGTAAGACGATAAGTTCTAATGACTTGGTGGTTGTTCCCCCTGATGTTGGCGGTGTTGCAAGAGCACGTACTTTTGCGAAGAAGTTGTCTAATGCACCTTTGGCTATTGTAGACAAAAGGCGCCACGGACACAATGTTGCTGAGGTGATGAATCTGATTGGTGATGTAAAAGGAAAGGTTGCTGTAATGGTGGATGATATGATTGACACGGCTGGAACCATTGCCAAGGGTGCAACACTATTACATGAAGAGGGAGCTAGGGAAGTTTATGCTTGTTTCACTCACGGTGTTTTCAGCCCTCCTGCAATCGAGAGGCTATCCAGTGGCTTATTTCAAGAGGTGATAATTACCAACACCATTCCAGTTTCAGAGAAGAACTATTTCCCTCAGTTAACTATTCTTACCGTAGCAAACCTGTTGGCTGTATACAATGCTTTATCTGAAGATGGAAAGAAGGAATTTGAGAAAAGTTATGGTAAAGCGGTGCAATTCTTTACCATGTTCCGGAAATCAAAAGTACCTTGCATGATAAAATTGATTTTTCAAGTTCTGAATTTCGTGTTGCAAATAATCAGTGACAATTTTTCATTCAAGCAATGGGATCCAGGAACAATATCTCTATTCTCATATTGA 1998 0.4024 MTANHPDYASLAAKTAVSNLHKHTKDSFSETVKIMYNHFNHRSGKKAPLIANDVYEIIIENATRLDNERWFTHASPTLFNAGTPWAKGGKNQKVIALLVLAMKGWNLPVSADEEKTSNIPDCEQYKSDFPEEYTDAKFFVIKCYSKDDIQKSIKYDVWASTQNDNKKLDGAYQKAQQKHGGCPIFLLFFVNTSGKSVGLAEIIGPVDFNKILEYWQQDKWDGGSSSTNNHFSNSVLDHPVFIPAYLRNVVRNASRPSSTANLSRVVDEADCLFGMGFAEQLHQILAQLGDHHQTLLFSATLHSALAEFAKAGLREPLLVRPDLETKISPDLKLVFFTLRQEENSLFQQEDIEPSECYGDMNQDARKMHVSRFKSWNILLLIVTDIVVRGIDIPLHDTVINWNFWHKPKIFIHLVGRVARADRVLACDLHSGQSMGYFDIPLDHVHCQPVILDYLASKTISSNDLVVVPPDVGGVARARTFAKKLSNAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGATLLHEEGAREVYACFTHGVFSPPAIERLSSGLFQEVIITNTIPVSEKNYFPQLTILTVANLLAVYNALSEDGKKEFEKSYGKAVQFFTMFRKSKVPCMIKLIFQVLNFVLQIISDNFSFKQWDPGTISLFSY 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00834 665 Pfam DEAD/DEAH box helicase 264 306 IPR011545 GO:0003676|GO:0005524
Vivi4g00834 665 SUPERFAMILY R1 subunit of ribonucleotide reductase, N-terminal domain 3 85 IPR008926 -
Vivi4g00834 665 Gene3D ph1033 like domains 115 232 - -
Vivi4g00834 665 Gene3D - 8 106 - -
Vivi4g00834 665 ProSiteProfiles YTH domain profile. 136 281 IPR007275 GO:0003723
Vivi4g00834 665 Gene3D - 233 325 IPR027417 -
Vivi4g00834 665 SMART helicmild6 340 421 IPR001650 -
Vivi4g00834 665 FunFam Ribose-phosphate pyrophosphokinase 446 589 - -
Vivi4g00834 665 CDD PRTases_typeI 476 574 IPR000836 -
Vivi4g00834 665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 280 475 IPR001650 -
Vivi4g00834 665 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 265 319 IPR014001 -
Vivi4g00834 665 NCBIfam ribose-phosphate diphosphokinase 418 596 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vivi4g00834 665 Pfam Phosphoribosyl synthetase-associated domain 504 580 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vivi4g00834 665 SUPERFAMILY PRTase-like 397 583 IPR029057 -
Vivi4g00834 665 Pfam YT521-B-like domain 136 216 IPR007275 GO:0003723
Vivi4g00834 665 CDD YTH 137 222 IPR007275 GO:0003723
Vivi4g00834 665 Gene3D - 326 434 IPR027417 -
Vivi4g00834 665 Gene3D - 446 589 IPR029057 -
Vivi4g00834 665 Pfam Helicase conserved C-terminal domain 333 420 IPR001650 -
Vivi4g00834 665 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 427 442 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Vivi4g00834 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 422 IPR027417 -
Vivi4g00834 665 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 417 596 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00834 Vivi-Chr4 19473381 19475489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00834 222 422 Eukaryotic Initiation Factors Gene Family AT1G72730 25.431 2.42e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00834 K00948 - gmx:100807743 326.635