Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00833 ATGAAGGATGGTGGTAGAAAGCATGGTGTAATGACACCATGTGCTGCATGCAAGCTTCTAAGAAGAAGATGTGCCCATGATTGTGTGTTTGCTCCATATTTTCCAGCTGATGAACCTCATAAGTTTGGAAGTGTTCATAAGGTTTTTGGAGCAAGCAATGTGAACAAAATGTTACAGGAATTACCAGAACATCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTGTATGGATGTGTTGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGTGCTTCAAACCCAATTAGCACAAGCACAAGCAGAAGTTGTTCATATGAAAATGCACCAATCATCATCATCATCATCAAATCAACACCAAGCATCACCATCATCAGAAAATGTGTACCAATCAAGCAGGCCTTTTTCTTCACAAACCTTGTGGTCATACTAG 462 0.4026 MKDGGRKHGVMTPCAACKLLRRRCAHDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLAQAQAEVVHMKMHQSSSSSSNQHQASPSSENVYQSSRPFSSQTLWSY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00833 153 Coils Coil 92 112 - -
Vivi4g00833 153 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vivi4g00833 153 MobiDBLite consensus disorder prediction 117 153 - -
Vivi4g00833 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 138 - -
Vivi4g00833 153 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00833 Vivi-Chr4 19446981 19451653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00833 1 123 AS2 family AT1G31320 80.488 3.17e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi4g00833 LOB 5.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00833 - - cam:101492597 217.238